BAC Information

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BAC

Clone NameB6Ng01-342G15
Chromosome11 (Build37)
Map Location 71,199,314 - 71,200,400
singlet/doubletsinglet
Overlap genenone
Upstream genePelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249
Downstream gene9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342G15.bB6Ng01-342G15.g
ACCGA125508GA125509
length1701,087
definitionB6Ng01-342G15.b B6Ng01-342G15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaac
atccttaatcatcagggaaatgcaaatcaaaacaaccctgacagtccacc
tcacaccaaactttatatgcctcagtatagtggaacgccagggccaagaa
gtgggagtgggtgggtaggg
gaattctctgaaatcttcttctaagaagtgagaactggatgaatgggtat
agcactgcctgcactccggtgactggaaaatgggtccatggggtcagtct
ggctcctctggttggcctaagtaaggtggttccattgttgggagacttag
tgtattagttacagtgacaaaatatctggaaaaagaaacttagaagggaa
aggatttgttttgactcacaggttctgtccatcatggcagagaaaatgtg
atattgggagctgggcaactggtcatattgtatctcaagtcagaaagcag
agaatggggaggaagcaggacaaggctgtagaacctcagtaaacccctta
ctctagtgaggctccacctcctaaaaggctccataacattccaaaaccac
catcagcttgggaccaagtattcaagcacaagagcccatttgggacattt
cagagtcagaccacaatagcgattaagggagcacacggtgaatgatatta
tgtctgctgtacaagaacagaattccgagtggagagcaggcttcacatag
cttgaatctggaggatagtcatggaaccaaagtgaatgtagtgctgtgac
tatctaacacaacacctacaccttaataacattaaagcaaatgctttctt
ctaatttgtttcaagagttcagatgaagtaaagcagagacatttgtctct
gctctctatcttgggacctcagttgggaggattccctcagttttgggaga
actcaggggctaaagccaagaatgtctggctgccatcattacttgtgtat
ccagtggttgaaatcaaatgcctgttagttggacctcttgtggaccgtca
gttagaatatctgtatgtgacctatctacatgggcctttcatgggctttc
tcatgggcatggcggctgggtctcaagagcagcatctctaagttacagaa
gttcatgaagacttatggtgaagtctagaatcatacacgatcacctggcc
acactgttagtcaggatgcacaagagaactcacagtccacatcagagaga
attgttatcctccacagtgaggaatatccaagagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_71199314_71200400
seq2: B6Ng01-342G15.g_65_1151 (reverse)

seq1  ATTCTCTT-GATATTCCTCACTGT-GAGATTAAC-ATTCTCTCTGATGTG  47
      |||||||| ||||||||||||||| |||  |||| |||||||||||||||
seq2  ATTCTCTTGGATATTCCTCACTGTGGAGGATAACAATTCTCTCTGATGTG  50

seq1  ACCTGTGAGTCTCT-TTGTGGCCATCTTGACTAACAGTGTGGCCAGGTGA  96
        |||||||| ||| |||||  |||| |||||||||||||||||||||||
seq2  GACTGTGAGT-TCTCTTGTG--CATCCTGACTAACAGTGTGGCCAGGTGA  97

seq1  TCGTGTATGATTTCTAAGACTTCACCATAAGTCCTTCATGAACTTCTGTA  146
      |||||||||| |||| |||||||||||||||| |||||||||||||||||
seq2  TCGTGTATGA-TTCT-AGACTTCACCATAAGT-CTTCATGAACTTCTGTA  144

seq1  ACTTAGAGATGCCTGCTCTTGAGACCCAGCCGCCATG-CCATGAGAAAGC  195
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  ACTTAGAGATG-CTGCTCTTGAGACCCAGCCGCCATGCCCATGAGAAAGC  193

seq1  CCATGAAAGG-CCATGTAGATAGGTCACATACAGATATTCTAACTGACGG  244
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAAGGCCCATGTAGATAGGTCACATACAGATATTCTAACTGACGG  243

seq1  TCCACAAGAGGTCCAACTAACAGGCATTTGATTTCAACCACTGGATACAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAGAGGTCCAACTAACAGGCATTTGATTTCAACCACTGGATACAC  293

seq1  AAGTAATGATGGCAGCCAGACATTCTTGGCTTTAGCCCCTGAGTTCTCCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATGATGGCAGCCAGACATTCTTGGCTTTAGCCCCTGAGTTCTCCC  343

seq1  AAAACTGA-GGAATCCTCCCAACTGAGGTCCCAAGATAGAGAGCAGAGAC  393
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGAGGGAATCCTCCCAACTGAGGTCCCAAGATAGAGAGCAGAGAC  393

seq1  AAATGTCTCTGCTTTACTTCATCTGAACTCTTGAAACAAATTAGAAGAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTCTGCTTTACTTCATCTGAACTCTTGAAACAAATTAGAAGAAA  443

seq1  GCATTTGCTTTAATGTTATTAAGGTGTAGGTGTTGTGTTAGATAGTCACA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGCTTTAATGTTATTAAGGTGTAGGTGTTGTGTTAGATAGTCACA  493

seq1  GCACTACATTCACTTTGGTTCCATGACTATCCTCCAGATTCAAGCTATGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTACATTCACTTTGGTTCCATGACTATCCTCCAGATTCAAGCTATGT  543

seq1  GAAGCCTGCTCTCCACTCGGAATTCTGTTCTTGTACAGCAGACATAATAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTGCTCTCCACTCGGAATTCTGTTCTTGTACAGCAGACATAATAT  593

seq1  CATTCACCGTGTGCTCCCTTAATCGCTATTGTGGTCTGACTCTGAAATGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACCGTGTGCTCCCTTAATCGCTATTGTGGTCTGACTCTGAAATGT  643

seq1  CCCAAATGGGCTCTTGTGCTTGAATACTTGGTCCCAAGCTGATGGTGGTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATGGGCTCTTGTGCTTGAATACTTGGTCCCAAGCTGATGGTGGTT  693

seq1  TTGGAATGTTATGGAGCCTTTTAGGAGGTGGAGCCTCACTAGAGTAAGGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATGTTATGGAGCCTTTTAGGAGGTGGAGCCTCACTAGAGTAAGGG  743

seq1  GTTTACTGAGGTTCTACAGCCTTGTCCTGCTTCCTCCCCATTCTCTGCTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTGAGGTTCTACAGCCTTGTCCTGCTTCCTCCCCATTCTCTGCTT  793

seq1  TCTGACTTGAGATACAATATGACCAGTTGCCCAGCTCCCAATATCACATT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTTGAGATACAATATGACCAGTTGCCCAGCTCCCAATATCACATT  843

seq1  TTCTCTGCCATGATGGACAGAACCTGTGAGTCAAAACAAATCCTTTCCCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCCATGATGGACAGAACCTGTGAGTCAAAACAAATCCTTTCCCT  893

seq1  TCTAAGTTTCTTTTTCCAGATATTTTGTCACTGTAACTAATACACTAAGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTTTCTTTTTCCAGATATTTTGTCACTGTAACTAATACACTAAGT  943

seq1  CTCCCAACAATGGAACCACCTTACTTAGGCCAACCAGAGGAGCCAGACTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAACAATGGAACCACCTTACTTAGGCCAACCAGAGGAGCCAGACTG  993

seq1  ACCCCATGGACCCATTTTCCAGTCACCGGAGTGCAGGCAGTGCTATACCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATGGACCCATTTTCCAGTCACCGGAGTGCAGGCAGTGCTATACCC  1043

seq1  ATTCATCCAGTTCTCACTTCTTAGAAGAAGATTTCAGAGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCCAGTTCTCACTTCTTAGAAGAAGATTTCAGAGAATTC  1087