BAC Information

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BAC

Clone NameB6Ng01-343B07
Chromosome11 (Build37)
Map Location 58,959,032 - 58,959,557
singlet/doubletsinglet
Overlap genenone
Upstream geneGemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn
Downstream geneA230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343B07.bB6Ng01-343B07.g
ACCGA125956GA125957
length802104
definitionB6Ng01-343B07.b B6Ng01-343B07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaggtcagcctggtctacagagtgagttccaggacagccagggc
tacacagagagactctgccttgaaaaacaaaaccaatgaaccaaccaaca
aatcaatcaatcaatcaatcaaaaaaaaaaccatacatgtttaaggtgtg
taacaatgtggaagatattttgagttaattaatgttcaagggtatccata
cctcacaattacttttgtgtgtgtggtgaagacatgtaagatccaattgc
tgggctggaaagatggctcagaggttaagagcactggttgcttgctcttc
cagaggtcctgagttcaatttctaggaaccacatggtggctcataaccat
ttgtaatgggatctgatgccctcttctggtgtgtctgaagacagccacag
tgtactcatataaatgaaataaataaatcttaaaaaagggtaagatccaa
ttgtttaagtaagcagcagtgctattgaaaaggccttcccttattgttat
tgagtggaagtacttatcccattgagaacattaggagatgcatgatgtat
gaaccatttgctgttgtctgtctgcattgctgtttctgcagtgacacaag
cggctttagttaggtgcatgggtaagtacctgtgatcttgtagcacagtg
tgagtatgatgtggttttccttaaagttggatgagagtacagatacaaaa
tgttcccacccacacgcacagagacagcttcttgggaagggcagacaggt
ccatttgcttgattctggtttattattcttatgtaccccaccacctgtgg
aa
cagggaggggtgggtaaccttatcttaattcactggctctatatctgggg
acattccagaaccaccacttggggctgggggctgtgtggagggggggcgg
gggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_58959032_58959557
seq2: B6Ng01-343B07.b_321_851 (reverse)

seq1  TCCACAGCTGGT-GGGTACATAAGAATAAT-AACCAGAGTCAAGCAAAT-  47
      ||||||| |||| ||||||||||||||||| ||||||| |||||||||| 
seq2  TCCACAGGTGGTGGGGTACATAAGAATAATAAACCAGAATCAAGCAAATG  50

seq1  GACCTGTCTGCCCTTCCCA--GAGCTGTCTCTGTGCGTGTGGGTGGGAAC  95
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  GACCTGTCTGCCCTTCCCAAGAAGCTGTCTCTGTGCGTGTGGGTGGGAAC  100

seq1  ATTTTGTATCTGTACTCTCATCCAACTTTAAGGAAAACCACATCATACTC  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTATCTGTACTCTCATCCAACTTTAAGGAAAACCACATCATACTC  150

seq1  ACACTGTGCTACAAGATCACAGGTACTTACCCATGCACCTAACTAAAGCC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGCTACAAGATCACAGGTACTTACCCATGCACCTAACTAAAGCC  200

seq1  GCTTGTGTCACTGCAGAAACAGCAATGCAGACAGACAACAGCAAATGGTT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGTCACTGCAGAAACAGCAATGCAGACAGACAACAGCAAATGGTT  250

seq1  CATACATCATGCATCTCCTAATGTTCTCAATGGGATAAGTACTTCCACTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATCATGCATCTCCTAATGTTCTCAATGGGATAAGTACTTCCACTC  300

seq1  AATAACAATAAGGGAAGGCCTTTTCAATAGCACTGCTGCTTACTTAAACA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAATAAGGGAAGGCCTTTTCAATAGCACTGCTGCTTACTTAAACA  350

seq1  ATTGGATCTTACCCTTTTTTAAGATTTATTTATTTCATTTATATGAGTAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATCTTACCCTTTTTTAAGATTTATTTATTTCATTTATATGAGTAC  400

seq1  ACTGTGGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACA  450

seq1  AATGGTTATGAGCCACCATGTGGTTCCTAGAAATTGAACTCAGGACCTCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTATGAGCCACCATGTGGTTCCTAGAAATTGAACTCAGGACCTCT  500

seq1  GGAAGAGCAAGCAACCAGTGCTCTTAACCTC  526
      |||||||||||||||||||||||||||||||
seq2  GGAAGAGCAAGCAACCAGTGCTCTTAACCTC  531