BAC Information

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BAC

Clone NameB6Ng01-343N16
Chromosome11 (Build37)
Map Location 62,235,826 - 62,383,475
singlet/doubletdoublet
Overlap geneNcor1, Pigl, Prr6, Ubb
Upstream geneZfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19
Downstream geneTrpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343N16.bB6Ng01-343N16.g
ACCGA126519GA126520
length1,152695
definitionB6Ng01-343N16.b B6Ng01-343N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,235,826 - 62,236,974)(62,382,772 - 62,383,475)
sequence
gaattcagaggcaggagaatttctgtgagccagcttaacctacatagtga
gttctagaccatcagggctagatatggagactctgtctcaaaaagagggg
aaatttttccccccagaaacaaaacacaagacagtaagggtgcttgccat
gaaacctgatgcccaagttcaaccctaggccccacggggcggaaggagat
aactgagtcctccaacctcccatccatgccttggtgcagaagcctccctg
ccaccacacaagtaagataaatacgacaaaactgagtcttcagtatctct
ggccacattgtacaaagcagcaaacaatgtatgaaaattattgaactcct
caaaagtcaaaggtaccaccaattttgaaatctgaagcacttagtctgtg
gtttgcagttttacctaacacctttactcccataacactaaccttttaga
ggctgtgagaatgttggcttctcttttaggcactctgcctaaaattggtt
acaaaaacattacaaacctaagttccacggaacaagaaaacaaacattta
ccttcttagcatctgcagacgacctcaagccttctggcagcgagtgaact
aaaggtaaaaccgcagcactaacacgctggaaatgggcatcagaaactgg
ctccaggcgtgggcgcttggactccaaggaatcatgatccaccggtgagg
gtcctgagtgaaactgttcatatccagttctcctttcttgaggcctaata
cattccaaaaaataaaaataaaaacaaagcaaaaaccatctgaaaattgt
taagtgacatttaaacctttgctaacacccctattagacatcagagtgag
cgaaaggtcatacttacttccaaaatgaattgctgcccactctacctatt
ccagaacaatattcagcatgcccacaatatgcatcccaggatagccacgc
atgaagcacacacatttgtagataacaaagtcatgtacatgtcaaaggtt
agacacacctgaatgtcacccgaatagtataacattttctaacagagtat
cttcttttgggatgaagagaaagacttatacaggaaattgaaaagcttaa
tacaagattttttatttgtaaacttaagttacaaaaaagagatccaaaaa
gt
gaattcaaagccagccatggtgagttacagtccagccagggctccacaga
agaccctggccccaaaacaaacaaacaaacaaacaaacaaacaaacaaac
aaacaccaaaccacgacaaaaaaaccccaaaaactttagtgaactctaat
tcttgctttgtattcttcttctttttttttttttttaagatttacttata
tttatatgaatacactgtagctatttttagatgtaccagaagagggcatc
agatcctactacagaaggttgtgagccaccatgtggttgctgggaattga
actgaggacctttggaagagcaatcagtgctctcaaccactgagccatct
ccccagcccttgttttgtattctcttgtcctgaaattattttctgttgtg
aaaccaaggatccagctccgtctgagtggaggtctatgaaggtctatgaa
gtggaggtctatgaaggtctatgaagtggaggtctatgaaggtctatgaa
gtggaggtctatgaaggtctatgaagtggaggtctatggaggtctatgaa
gtggaggtctatgaaagtctatggagtggaggagatctatgaaggtctat
gaagtggaggtctatgaaggtctatgaagtggaggtctatgaaggtctat
ggagtggaagtctatgaaggtctatgaagtggagattctatgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_62235826_62236974
seq2: B6Ng01-343N16.b_47_1198

seq1  GAATTCAGAGGCAGGAGAATTTCTGTGAGCCAGCTTAACCTACATAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGCAGGAGAATTTCTGTGAGCCAGCTTAACCTACATAGTGA  50

seq1  GTTCTAGACCATCAGGGCTAGATATGGAGACTCTGTCTCAAAAAGAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGACCATCAGGGCTAGATATGGAGACTCTGTCTCAAAAAGAGGGG  100

seq1  AAATTTTTCCCCCCAGAAACAAAACACAAGACAGTAAGGGTGCTTGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTCCCCCCAGAAACAAAACACAAGACAGTAAGGGTGCTTGCCAT  150

seq1  GAAACCTGATGCCCAAGTTCAACCCTAGGCCCCACGGGGCGGAAGGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTGATGCCCAAGTTCAACCCTAGGCCCCACGGGGCGGAAGGAGAT  200

seq1  AACTGAGTCCTCCAACCTCCCATCCATGCCTTGGTGCAGAAGCCTCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGTCCTCCAACCTCCCATCCATGCCTTGGTGCAGAAGCCTCCCTG  250

seq1  CCACCACACAAGTAAGATAAATACGACAAAACTGAGTCTTCAGTATCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACACAAGTAAGATAAATACGACAAAACTGAGTCTTCAGTATCTCT  300

seq1  GGCCACATTGTACAAAGCAGCAAACAATGTATGAAAATTATTGAACTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACATTGTACAAAGCAGCAAACAATGTATGAAAATTATTGAACTCCT  350

seq1  CAAAAGTCAAAGGTACCACCAATTTTGAAATCTGAAGCACTTAGTCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTCAAAGGTACCACCAATTTTGAAATCTGAAGCACTTAGTCTGTG  400

seq1  GTTTGCAGTTTTACCTAACACCTTTACTCCCATAACACTAACCTTTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGTTTTACCTAACACCTTTACTCCCATAACACTAACCTTTTAGA  450

seq1  GGCTGTGAGAATGTTGGCTTCTCTTTTAGGCACTCTGCCTAAAATTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGAGAATGTTGGCTTCTCTTTTAGGCACTCTGCCTAAAATTGGTT  500

seq1  ACAAAAACATTACAAACCTAAGTTCCACGGAACAAGAAAACAAACATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACATTACAAACCTAAGTTCCACGGAACAAGAAAACAAACATTTA  550

seq1  CCTTCTTAGCATCTGCAGACGACCTCAAGCCTTCTGGCAGCGAGTGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTAGCATCTGCAGACGACCTCAAGCCTTCTGGCAGCGAGTGAACT  600

seq1  AAAGGTAAAACCGCAGCACTAACACGCTGGAAATGGGCATCAGAAACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAAACCGCAGCACTAACACGCTGGAAATGGGCATCAGAAACTGG  650

seq1  CTCCAGGCGTGGGCGCTTGGACTCCAAGGAATCATGATCCACCGGTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGCGTGGGCGCTTGGACTCCAAGGAATCATGATCCACCGGTGAGG  700

seq1  GTCCTGAGTGAAACTGTTCATATCCAGTTCTCCTTTCTTGAGGCCTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGTGAAACTGTTCATATCCAGTTCTCCTTTCTTGAGGCCTAATA  750

seq1  CATTCCAAAAAATAAAAATAAAAACAAAGCAAAAACCATCTGAAAATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAAAAAATAAAAATAAAAACAAAGCAAAAACCATCTGAAAATTGT  800

seq1  TAAGTGACATTTAAACCTTTGCTAACACCCCTATTAGACATCAGAGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGACATTTAAACCTTTGCTAACACCCCTATTAGACATCAGAGTGAG  850

seq1  CGAAAGGTCATACTTACTTCCAAAATGAATTGCTGCCCACTCTACCTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGGTCATACTTACTTCCAAAATGAATTGCTGCCCACTCTACCTATT  900

seq1  CCAGAACAATATTCAGCATGCCCACAATATGCATCCCAGGATAGCCACGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACAATATTCAGCATGCCCACAATATGCATCCCAGGATAGCCACGC  950

seq1  ATGAAGCACAACACATTTGTAGATAACAAAGTCATGTACAATGTCAAAAG  1000
      ||||||||| ||||||||||||||||||||||||||||| ||||| ||||
seq2  ATGAAGCAC-ACACATTTGTAGATAACAAAGTCATGTAC-ATGTC-AAAG  997

seq1  GTTAGACACACCTGAATGTCACCCGAATAGTATTAACA-TTTCTAACAGA  1049
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  GTTAGACACACCTGAATGTCACCCGAATAGTA-TAACATTTTCTAACAGA  1046

seq1  GTATCT--CTTTGGGATGAAGAGAAAGACTAATACAG--AAATGAAAAGC  1095
      ||||||   ||||||||||||||||||||| ||||||  || ||||||||
seq2  GTATCTTCTTTTGGGATGAAGAGAAAGACTTATACAGGAAATTGAAAAGC  1096

seq1  TTAATACAAGA-TTTTTATTTGTAAAACTAAGTTAC-AAAAAGAGATCCA  1143
      ||||||||||| ||||||||||||||  |||||||| |||||||||||||
seq2  TTAATACAAGATTTTTTATTTGTAAACTTAAGTTACAAAAAAGAGATCCA  1146

seq1  AAAAGT  1149
      ||||||
seq2  AAAAGT  1152

seq1: chr11_62382772_62383475
seq2: B6Ng01-343N16.g_68_762 (reverse)

seq1  CTTCATAGACCTTCATAG-ATCTCCACTTCATAGACCTTCATAGACCTCC  49
                |||||||| ||||||||||||||||||||||||||| |||
seq2  ----------CTTCATAGAATCTCCACTTCATAGACCTTCATAGACTTCC  40

seq1  ACTCCATAGACCTTCATAGACCTCCACTTCATAGACCTTCATAGACCTCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATAGACCTTCATAGACCTCCACTTCATAGACCTTCATAGACCTCC  90

seq1  ACTTCATAGACCTTCATAGATCTCCTCCACTCCATAGACTTTCATAGACC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATAGACCTTCATAGATCTCCTCCACTCCATAGACTTTCATAGACC  140

seq1  TCCACTTCATAGACCTCCATAGACCTCCACTTCATAGACCTTCATAGACC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCATAGACCTCCATAGACCTCCACTTCATAGACCTTCATAGACC  190

seq1  TCCACTTCATAGACCTTCATAGACCTCCACTTCATAGACCTTCATAGACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCATAGACCTTCATAGACCTCCACTTCATAGACCTTCATAGACC  240

seq1  TCCACTTCATAGACCTTCATAGACCTCCACTCAGACGGAGCTGGATCCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCATAGACCTTCATAGACCTCCACTCAGACGGAGCTGGATCCTT  290

seq1  GGTTTCACAACAGAAAATAATTTCAGGACAAGAGAATACAAAACAAGGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCACAACAGAAAATAATTTCAGGACAAGAGAATACAAAACAAGGGC  340

seq1  TGGGGAGATGGCTCAGTGGTTGAGAGCACTGATTGCTCTTCCAAAGGTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGATGGCTCAGTGGTTGAGAGCACTGATTGCTCTTCCAAAGGTCC  390

seq1  TCAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCTTCTGTAGTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCTTCTGTAGTAG  440

seq1  GATCTGATGCCCTCTTCTGGTACATCTAAAAATAGCTACAGTGTATTCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATGCCCTCTTCTGGTACATCTAAAAATAGCTACAGTGTATTCAT  490

seq1  ATAAATATAAGTAAATCTTAAAAAAAAAAAAAAAGAAGAAGAATACAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATAAGTAAATCTTAAAAAAAAAAAAAAAGAAGAAGAATACAAAG  540

seq1  CAAGAATTAGAGTTCACTAAAGTTTTTGGGGTTTTTTTGTCGTGGTTTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTAGAGTTCACTAAAGTTTTTGGGGTTTTTTTGTCGTGGTTTGG  590

seq1  TGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGGGGCCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGGGGCCAG  640

seq1  GGTCTTCTGTGGAGCCCTGGCTGGACTGTAACTCACCATGGCTGGCTTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCTGTGGAGCCCTGGCTGGACTGTAACTCACCATGGCTGGCTTTG  690

seq1  AATTC  704
      |||||
seq2  AATTC  695