BAC Information

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BAC

Clone NameB6Ng01-344E24
Chromosome11 (Build37)
Map Location 24,748,904 - 24,750,067
singlet/doubletsinglet
Overlap genenone
Upstream genePapolg, A830031A19Rik, LOC100042256, Bcl11a
Downstream geneLOC100042282, 5730522E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344E24.bB6Ng01-344E24.g
ACCGA126835GA126836
length1,1631,168
definitionB6Ng01-344E24.b B6Ng01-344E24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcaataaaaaataaattacatagaagttcatgatgagttgtaa
aggcagagagactatattatacagtgggcaacatcgcctcactatttata
accttgtgcaaatatttctagcaggaaactcgaagagatttgagatgtgc
ggatagcaattactcacagatccaaactatctgcagatatttcaaataac
agcttttagcagatttcttcaccaacaaaggcgactttcatttgaaacag
cgttctgctaatgtgttgcttcttgcttttgacatcttccctggcttcct
aaggtcatgtgagatcttagctgaaggagagataagtcttcacataacaa
gacatggtggagcccatagaagagcactttatcctgtgtaaaagcaggta
cacgccagagtatgttctttccttttcgttgaaggtacaggttgcagtgg
ctgcacaggttagctggaacccagctttgcaacattactcctttatgatt
tctaaagaaagtcaaagcattttaaatcctgatctaccaggcatgtgcag
ggctagaagcaagagtcagtcaagatataagagctacagtctctgtggga
ggaaactaaagaaaagcatatctgatctgggtcaaagtgagctgctaact
ctgcatttcaaggctggctgggtggggcccaaggtcatacaaagctataa
taccaacttaagtttagatagccaatacaaataggatattgatgtctgga
tgctcattacctcccttcccagtgatgttagcacagatcaagtatacttt
ggtcatctccatgcagggtaaggagagtttctgaaatggagacaagcaca
gtcctctatgggagaatgagagctggagccctgggtttaagaaagtggtt
tatattcagttttaatattcacttctgccatttggtcaacaggcctgttc
tgaattgtagaggattagagtaaatgtgatcttaaatttttatggaaaga
ttctaagaattctcagatacacatggaggtgatatcttggttctgtggat
gggccataaattttgtaatatctgtattgtagcagatgtttgtgttcagt
aatcatttgctcctaaaacccctccagtcctgaaaaccccaatagaggaa
tgagtctcactct

gaattctccttgccacttctgaaaatatctgaggacaaatggatggaatt
agaaagtactaaactaagtgttataacctagagtcataaatgtcacacat
tttctcttatttgtggatcctacttccaaatctttagtgtgaatttatca
tgtggagtattcaggaaagtaaaacgggaccatgggttggagaaggagcc
atagagaggaggatgataggtcataggtgctatgaaggtagaaattggaa
atgagggtaaacttgactgagaagaggtgaaagcaaactgggagataggg
agggaggaaagacatataccattaaagattttttaaaaaccatagggaaa
cattttatgtttatttaaaaatacttatataaatagttaaatgatatagt
ttgaatgaagttatgccactatggttataatgtgtccctccctgcatgag
tcatagactaacaaaaaaatccagtgtgaaccatgggaaactgtcctttg
agttgttgatctagaatgttcaagagactccataaacaatataggcttct
gccattgccttgattgtatccctggaacttaaagtaagactcagttgctg
atgacatcacacactttagacacgggacttagagaaatggcgcttgaaat
aatatgagagccttttcactgaagactagctctaataatatccaaacgtg
ctatgaaattaataatcccactcagctctaaagtctgtgaaacacacagc
aaaagccagcatggcaagatatcagcaatggtagaaaagtggcacttaca
tattgggcaaggacccacagccatctagttgaacttaaggcacactcaac
aggagagagtgatgcctggctataaaccaagctaactagtgaggctgtgg
atcttggaagagaacctccctactgctgccatttcctaaccagcaataat
ctctatctgcattccaaatactcatcttttgacccacagtgagagcagct
ctccacccccttatgaagatgagtctttttccttgcagatggagaaaaat
atgggtccacctaaacaagaacctaatgatggacactggtgcaatacaac
attgccatgaacgtctctcagcttcttactctaagaaaagagttaactag
tcaattataaatggtcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_24748904_24750067
seq2: B6Ng01-344E24.b_43_1205

seq1  GAATTCTTCAATAAAAAATAAATTACATAGAAGTTCATGATGAGTTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAATAAAAAATAAATTACATAGAAGTTCATGATGAGTTGTAA  50

seq1  AGGCAGAGAGACTATATTATACAGTGGGCAACATCGCCTCACTATTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGAGACTATATTATACAGTGGGCAACATCGCCTCACTATTTATA  100

seq1  ACCTTGTGCAAATATTTCTAGCAGGAAACTCGAAGAGATTTGAGATGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTGCAAATATTTCTAGCAGGAAACTCGAAGAGATTTGAGATGTGC  150

seq1  GGATAGCAATTACTCACAGATCCAAACTATCTGCAGATATTTCAAATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCAATTACTCACAGATCCAAACTATCTGCAGATATTTCAAATAAC  200

seq1  AGCTTTTAGCAGATTTCTTCACCAACAAAGGCGACTTTCATTTGAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTAGCAGATTTCTTCACCAACAAAGGCGACTTTCATTTGAAACAG  250

seq1  CGTTCTGCTAATGTGTTGCTTCTTGCTTTTGACATCTTCCCTGGCTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTGCTAATGTGTTGCTTCTTGCTTTTGACATCTTCCCTGGCTTCCT  300

seq1  AAGGTCATGTGAGATCTTAGCTGAAGGAGAGATAAGTCTTCACATAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATGTGAGATCTTAGCTGAAGGAGAGATAAGTCTTCACATAACAA  350

seq1  GACATGGTGGAGCCCATAGAAGAGCACTTTATCCTGTGTAAAAGCAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGTGGAGCCCATAGAAGAGCACTTTATCCTGTGTAAAAGCAGGTA  400

seq1  CACGCCAGAGTATGTTCTTTCCTTTTCGTTGAAGGTACAGGTTGCAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCAGAGTATGTTCTTTCCTTTTCGTTGAAGGTACAGGTTGCAGTGG  450

seq1  CTGCACAGGTTAGCTGGAACCCAGCTTTGCAACATTACTCCTTTATGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGGTTAGCTGGAACCCAGCTTTGCAACATTACTCCTTTATGATT  500

seq1  TCTAAAGAAAGTCAAAGCATTTTAAATCCTGATCTACCAGGCATGTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGAAAGTCAAAGCATTTTAAATCCTGATCTACCAGGCATGTGCAG  550

seq1  GGCTAGAAGCAAGAGTCAGTCAAGATATAAGAGCTACAGTCTCTGTGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAAGCAAGAGTCAGTCAAGATATAAGAGCTACAGTCTCTGTGGGA  600

seq1  GGAAACTAAAGAAAAGCATATCTGATCTGGGTCAAAGTGAGCTGCTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTAAAGAAAAGCATATCTGATCTGGGTCAAAGTGAGCTGCTAACT  650

seq1  CTGCATTTCAAGGCTGGCTGGGTGGGGCCCAAGGTCATACAAAGCTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTCAAGGCTGGCTGGGTGGGGCCCAAGGTCATACAAAGCTATAA  700

seq1  TACCAACTTAAGTTTAGATAGCCAATACAAATAGGATATTGATGTCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACTTAAGTTTAGATAGCCAATACAAATAGGATATTGATGTCTGGA  750

seq1  TGCTCATTACCTCCCTTCCCAGTGATGTTAGCACAGATCAAGTATACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTACCTCCCTTCCCAGTGATGTTAGCACAGATCAAGTATACTTT  800

seq1  GGTCATCTCCATGCAGGGTAAGGAGAGTTTCTGAAATGGAGACAAGCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCTCCATGCAGGGTAAGGAGAGTTTCTGAAATGGAGACAAGCACA  850

seq1  GTCCTCTATGGGAGAATGAGAGCTGGAG-CCTGGGTTTAAGAAAGTGGTT  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTCCTCTATGGGAGAATGAGAGCTGGAGCCCTGGGTTTAAGAAAGTGGTT  900

seq1  TATATTCAGTTTTAATATTCACTTCTGCCATTTGGTCAACAGGCCTGTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCAGTTTTAATATTCACTTCTGCCATTTGGTCAACAGGCCTGTTC  950

seq1  TGAATTGTAGAGGATTAGAGTAAATGTGATCTTAAATTTTTATGGAAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGTAGAGGATTAGAGTAAATGTGATCTTAAATTTTTATGGAAAGA  1000

seq1  TTCTAAGAATTCTCAGATACACATGGAGGTGATATCTTGGTTCTGTGGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCTAAGAATTCTCAGATACACATGGAGGTGATATCTTGGTTCTGTGGAT  1050

seq1  TGGGCATAAATTTTGTAATAATCTGTATTTGTTAGCAGATGTTGTGT-TT  1098
       || ||||||||||||||| |||||||||   ||||||||||| ||| ||
seq2  GGGCCATAAATTTTGTAAT-ATCTGTATT--GTAGCAGATGTT-TGTGTT  1096

seq1  CAGTAATACATTGCT-CTAAAACC---TCAGTTCCTTGAGACACACAATA  1144
      |||||||   ||||| ||||||||    ||||  | ||| |  | |||||
seq2  CAGTAATCATTTGCTCCTAAAACCCCTCCAGT--CCTGAAAACCCCAATA  1144

seq1  GAGG-ATGAGTTCTCATCTCT  1164
      |||| ||||| ||||| ||||
seq2  GAGGAATGAG-TCTCA-CTCT  1163


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