BAC Information

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BAC

Clone NameB6Ng01-348O05
Chromosome11 (Build37)
Map Location 39,175,193 - 39,217,011
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348O05.bB6Ng01-348O05.g
ACCGA130040GA130041
length1,2441,109
definitionB6Ng01-348O05.b B6Ng01-348O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,175,193 - 39,176,451)(39,216,489 - 39,217,011)
sequence
gaattcagggacacatatttgataaaagcccccaatgtatctgaaaaaaa
agcaaaataaacatgttaacataaaatcatgttctagctagctaaacatt
taaaaagtccaacttaatgccaccagcagatgtcaaatatgattagaact
cactgcactgttaatggatgcattttgattgtctgtgggtgatcttgata
gagtcaggaggagctctttcatagatttaaggacagatgatgggagaaac
aaggtttatttgagtctctcaaggcatgtgaaaccatgaacaaaaatatc
atattcctattatgttgcaaaaggatagattgaaacctggttgtaggaaa
tgccaaggagtcatgagggtcccaagaaaatagagtaatatagctgacta
tgtaactccagcttgtgggcatagctgtcctagcagcttgagggggcgta
gctttgagagctgttcagcatgggactgtgtaactgctgtcctctcttga
ttctgttaagctctttgctatagctcatgccagacctttctctacagaaa
ttacctgcagaggtcaccagaaagtacattccagtcatacctggcttcag
atactcttcaagggatttttttttttttctctctgtttccagcctgggct
tttccatccctagataaaggatatatgctatttcctgagtgtgttcaaag
aaataaagttatgaaaaattaacccttgcaggagaaaataacttgtgcag
accacactggtgtactcccagatgtgacacctgagctaatagcaaggttt
tcttctggtctgaaaggcattgaaaaaaaagcaaaaataaattatctgtg
ttttcctatagtgaaacagttacttaatggaacaccaatcttggtaagtt
ttttataaataaataattctaggtatatttcttctcaactatctggggtt
cagtggataatactaggctcccaaacaaaaggggtatttattttagttga
tacaaatggagcatagattctatgtttaccttatacaatataaatgatat
tcaaagtaggaaagtttcctcacaaatttcccggagtgaataggtgtgta
taatgctaatacatgaactcactgtgtttgtaacctctcatcagaatttt
atagactgaatctgagaactttcaggaaataagttcaactgaattctttc
aagtcagaacataagcctacgtactcactggatatacctgggag

gaattcattgtaggatcaatataatgcttcttaaatattgttggacagag
tttacatataacgtagttacttatttctaggcagaggtccaagataccta
aaaagatgctgcttacaaaataaccatctagccatggtaaaagcaacaca
gttcatagtagccaatgtataaaagcaaccctaatatcatcagtgatgag
tagatatgcaaagtaactatataaagacaagagaaaattattcggtccta
attggaaaaaaaaacttaatcctgttgcaacatgggtgcaatctgtacag
cttattctcataaagtgagcttggcataaagcaacaaatactatataatt
tcatttgcttagggttgctggagtacgctgactcataaaacaaaaaggtg
tatgctgtttggcagaggctgaggaaggaacacaatgaagaattgtagtt
taatgaagatggagatttagtgctgtaaatttaaaaagagttttgtaggt
agctggtgaccatgcttgaacagatacatatctaatattgcagacttctt
tacttaaaattatttagcatacatttctctcctgatacaatctttaaaat
aaccatcacatgcataatgtgaaagcattgtctaatgtctcatgagctaa
aaagatccaactattcttagactcttcagtctcactgggtacatctcctg
gtctctaagaaaacatatcagggtctgttttgtatgatagtgttcactta
attagaaaaggttttacagtagacccccatggacttcttaacagttctgt
tctggtcagcctgtataccatgaaaacactcctcttgagaaggatgggtc
tcattccccaaatgtgttgctggccacatgtttccctcttcagtattccc
tccacactgtcttcacatttcccatacttacagactctagatatctactg
ttttcttttctgtacttgatcttagccaaaagctgatgtttcatttcttt
agaatataaatcctcagagaatagccacagtcctgatgtaatgctgatta
cttttttggaagttggaaagtaagaccataggggacatctgtcactcatc
actggctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_39175193_39176451
seq2: B6Ng01-348O05.b_49_1292

seq1  GAATTCAGGGACACATATTTGATAAAAGCCCCCAATGTATCTGAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGACACATATTTGATAAAAGCCCCCAATGTATCTGAAAAAAA  50

seq1  AGCAAAATAAACATGTTAACATAAAATCATGTTCTAGCTAGCTAAACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATAAACATGTTAACATAAAATCATGTTCTAGCTAGCTAAACATT  100

seq1  TAAAAAGTCCAACTTAATGCCACCAGCAGATGTCAAATATGATTAGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTCCAACTTAATGCCACCAGCAGATGTCAAATATGATTAGAACT  150

seq1  CACTGCACTGTTAATGGATGCATTTTGATTGTCTGTGGGTGATCTTGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCACTGTTAATGGATGCATTTTGATTGTCTGTGGGTGATCTTGATA  200

seq1  GAGTCAGGAGGAGCTCTTTCATAGATTTAAGGACAGATGATGGGAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGGAGGAGCTCTTTCATAGATTTAAGGACAGATGATGGGAGAAAC  250

seq1  AAGGTTTATTTGAGTCTCTCAAGGCATGTGAAACCATGAACAAAAATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTATTTGAGTCTCTCAAGGCATGTGAAACCATGAACAAAAATATC  300

seq1  ATATTCCTATTATGTTGCAAAAGGATAGATTGAAACCTGGTTGTAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCTATTATGTTGCAAAAGGATAGATTGAAACCTGGTTGTAGGAAA  350

seq1  TGCCAAGGAGTCATGAGGGTCCCAAGAAAATAGAGTAATATAGCTGACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGGAGTCATGAGGGTCCCAAGAAAATAGAGTAATATAGCTGACTA  400

seq1  TGTAACTCCAGCTTGTGGGCATAGCTGTCCTAGCAGCTTGAGGGGGCGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTCCAGCTTGTGGGCATAGCTGTCCTAGCAGCTTGAGGGGGCGTA  450

seq1  GCTTTGAGAGCTGTTCAGCATGGGACTGTGTAACTGCTGTCCTCTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAGAGCTGTTCAGCATGGGACTGTGTAACTGCTGTCCTCTCTTGA  500

seq1  TTCTGTTAAGCTCTTTGCTATAGCTCATGCCAGACCTTTCTCTACAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTAAGCTCTTTGCTATAGCTCATGCCAGACCTTTCTCTACAGAAA  550

seq1  TTACCTGCAGAGGTCACCAGAAAGTACATTCCAGTCATACCTGGCTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGCAGAGGTCACCAGAAAGTACATTCCAGTCATACCTGGCTTCAG  600

seq1  ATACTCTTCAAGGGATTTTTTTTTTTTTCTCTCTGTTTCCAGCCTGGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTTCAAGGGATTTTTTTTTTTTTCTCTCTGTTTCCAGCCTGGGCT  650

seq1  TTTCCATCCCTAGATAAAGGATATATGCTATTTCCTGAGTGTGTTCAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCCCTAGATAAAGGATATATGCTATTTCCTGAGTGTGTTCAAAG  700

seq1  AAATAAAGTTATGAAAAATTAACCCTTGCAGGAGAAAATAACTTGTGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGTTATGAAAAATTAACCCTTGCAGGAGAAAATAACTTGTGCAG  750

seq1  ACCACACTGGTGTACTCCCAGATGTGACACCTGAGCTAATAGCAAGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACTGGTGTACTCCCAGATGTGACACCTGAGCTAATAGCAAGGTTT  800

seq1  TCTTCTGGTCTGAAAGGCATTGAAAAAAAAGCAAAAATAAATTATCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGTCTGAAAGGCATTGAAAAAAAAGCAAAAATAAATTATCTGTG  850

seq1  TTTTCCTATAGTGAAACAGTTACTTAATGGAACACCAATCTTGGTAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTATAGTGAAACAGTTACTTAATGGAACACCAATCTTGGTAAGTT  900

seq1  TTTTATAAATAAATAATTCTAAGTATATTTCTTCTCAACTATCTGGGGTT  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTTATAAATAAATAATTCTAGGTATATTTCTTCTCAACTATCTGGGGTT  950

seq1  CAGTGGATAATACTAGGCTCCCAAACAAAAGGGGTATTTATTTTAGTTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGATAATACTAGGCTCCCAAACAAAAGGGGTATTTATTTTAGTTGA  1000

seq1  TACAAAT-GAGCATAGATTCTATGTTTACCTTATACAATAATAAATGATA  1049
      ||||||| ||||||||||||||||||||||||||||||| ||||||||||
seq2  TACAAATGGAGCATAGATTCTATGTTTACCTTATACAAT-ATAAATGATA  1049

seq1  TTTCAAAGTAGGAAAGTTTCCTCACAAATTTCCC-GAGTGAATA-GTGTG  1097
       ||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  -TTCAAAGTAGGAAAGTTTCCTCACAAATTTCCCGGAGTGAATAGGTGTG  1098

seq1  TAATAATGCCTAATACATTGACTCAACTGTGTTTGGTAACCTCTTCATTC  1147
      | |||||| |||||||||  |||| ||||||||| |||||||| ||||  
seq2  T-ATAATG-CTAATACATGAACTC-ACTGTGTTT-GTAACCTC-TCATCA  1143

seq1  AAGATTTATAGAACTGGATCCTAGAACATTTCAGGAATATTAAAAAATCC  1197
       |  ||||||| |||| |||  ||||| ||||||||     || || | |
seq2  GAATTTTATAG-ACTGAATCTGAGAAC-TTTCAGGA-----AATAAGTTC  1186

seq1  AACATGATTTCTTTTAAAAGGTCAGGACATAAAGCTTACGTACCTACTGG  1247
      ||| ||| |||||| ||   ||||| |||| |||| |||||||  |||||
seq2  AAC-TGAATTCTTTCAA---GTCAGAACAT-AAGCCTACGTACTCACTGG  1231

seq1  ATATA-CTGGGAG  1259
      ||||| |||||||
seq2  ATATACCTGGGAG  1244


seq1: chr11_39216489_39217011
seq2: B6Ng01-348O05.g_665_1174 (reverse)

seq1  AGAGCCAGTGATGAGTGACAGATTGTTCACCTATTGTCCTTCCCTTTTCC  50
      |||||||||||||||||||||||   || ||||| ||| | |   |||||
seq2  AGAGCCAGTGATGAGTGACAGAT--GTCCCCTATGGTCTTAC---TTTCC  45

seq1  AACTTTCCCAAAAAGTTATCAGCATTAACATCAGGACCTGTTGGCTATCT  100
      ||| |||| ||||||| ||||||||| ||||||||| ||| |||||||  
seq2  AAC-TTCCAAAAAAGTAATCAGCATT-ACATCAGGA-CTG-TGGCTATTC  91

seq1  CCTGAAGATTTATATTCTAAAGAAATGGAAAACATCAGCCTTTTGGCTAA  150
       |||| |||||||||||||||||||||  ||||||||| |||||||||||
seq2  TCTGAGGATTTATATTCTAAAGAAATG--AAACATCAG-CTTTTGGCTAA  138

seq1  GATCAAGTACAGAAAAGGAAAACAAGTAGATATCTAGAGTCTGTAAGTAT  200
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  GATCAAGTACAGAAAA-GAAAAC-AGTAGATATCTAGAGTCTGTAAGTAT  186

seq1  GGG-AATGTGAAGACAGTGTGGAGGGAATACTGAAGAGGGAAACATGTGG  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGTGAAGACAGTGTGGAGGGAATACTGAAGAGGGAAACATGTGG  236

seq1  CCAGCAACACATTTGGGGAATGAGACCCATCCTTCTCAAGAGGAGTGTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACACATTTGGGGAATGAGACCCATCCTTCTCAAGAGGAGTGTTT  286

seq1  TCATGGTATACAGGCTGACCAGAACAGAACTGTTAAGAAGTCCATGGGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTATACAGGCTGACCAGAACAGAACTGTTAAGAAGTCCATGGGGG  336

seq1  TCTACTGTAAAACCTTTTCTAATTAAGTGAACACTATCATACAAAACAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGTAAAACCTTTTCTAATTAAGTGAACACTATCATACAAAACAGA  386

seq1  CCCTGATATGTTTTCTTAGAGACCAGGAGATGTACCCAGTGAGACTGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATATGTTTTCTTAGAGACCAGGAGATGTACCCAGTGAGACTGAAG  436

seq1  AGTCTAAGAATAGTTGGATCTTTTTAGCTCATGAGACATTAGACAATGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAGAATAGTTGGATCTTTTTAGCTCATGAGACATTAGACAATGCT  486

seq1  TTCACATTATGCATGTGATGGTTA  523
      ||||||||||||||||||||||||
seq2  TTCACATTATGCATGTGATGGTTA  510


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