Query= MSMg01no046_l24.b1 MSMg01no046_l24.b1 CHROMAT_FILE:
MSMg01no046_l24.b1 PHD_FILE: MSMg01no046_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:58 2005
(472 letters)
>mm_chr11_70721034_70721905
Length = 872
Score = 878 bits (454), Expect = 0.0
Identities = 463/466 (99%), Gaps = 1/466 (0%)
Strand = Plus / Plus
Query: 8 acttctctgtataattatgtttgttccccctcactatgcagaaaagg-agatttatcttt 66
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 207 acttctctgtataattatgtttgttccccctcactatgcagaaaaggtagatttatcttt 266
Query: 67 gttgagctggttgttacttggactttgagcatccttttgtgttttatgtatgcctctcac 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gttgagctggttgttacttggactttgagcatccttttgtgttttatgtatgcctctcac 326
Query: 127 atcctattttttccctcccctcgcttccctctttgtctttcagttttatgagatagagtc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atcctattttttccctcccctcgcttccctctttgtctttcagttttatgagatagagtc 386
Query: 187 tcactgtgtctcacagcttgacttgagtttgtgcctactgactcagcctctgggccgctg 246
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tcactgtgtctcacaacttgacttgagtttgtgcctactgactcagcctctgggccgctg 446
Query: 247 ggattacagctcccattggtagtaccagagtttgtacgtgttttcaatgggagtatgatg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggattacagctcccattggtagtaccagagtttgtacgtgttttcaatgggagtatgatg 506
Query: 307 tcaggatagctttttctgttttccgtggtgagataagatttattttatgtagttttcctg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tcaggatagctttttctgttttccgtggtgagataagatttattttatgtagttttcctg 566
Query: 367 ttttgggttatctggactagggagttgcttttcttttgtttgtcttactttcatacagtg 426
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttttgggttatctggaccagggagttgcttttcttttgtttgtcttactttcatacagtg 626
Query: 427 tgctttcttaaatgttgctttttgatttgcttcctttgtgcttata 472
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tgctttcttaaatgttgctttttgatttgcttcctttgtgcttata 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_l24.g1 MSMg01no046_l24.g1 CHROMAT_FILE:
MSMg01no046_l24.g1 PHD_FILE: MSMg01no046_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:58 2005
(542 letters)
>mm_chr11_70864709_70865648
Length = 940
Score = 936 bits (484), Expect = 0.0
Identities = 509/520 (97%), Gaps = 6/520 (1%)
Strand = Plus / Minus
Query: 25 aataaatctctttaaaataagtctgtgatgtgattctctcattagaagaagacaagaaga 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 aataaatctctttaaaataagtctgtgatgtgattctctcattagaagaagacaagaaga 881
Query: 85 agcaaagaggagcagggctgaggctcctgagctcctgagctcagctggggagacacaccc 144
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 agcaaagaggaacagggctgaggctcctgagctcctgagctcagctggggagacacaccc 821
Query: 145 tgggagctgcaatccctctgctgagaatgcttcctctcagagctgtgtggttcctgagct 204
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 820 tgggagctgcaatccctctgctgaggatgcttcctctcagagctgtgtggttcctgagct 761
Query: 205 cccatgtctcaggatgccctgggcagacagagagccttaaaggagccttgagtggacctt 264
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 cccatgtctcaggaagccctgggcagacagagagccttaaaggagccttgagtggacctt 701
Query: 265 gtgatgctgaaatgaaataagctccatgcccttgataggcatgcaaaccaggaaagcttc 324
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 700 gtgatgctgaaatgaaataagctccatgcccttgataggcacgcaaaccaggaaagcttc 641
Query: 325 cct--tgtgtgtgtgcccttctctacttccatgcttccagcttcttctcccttctagttc 382
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 cctcatgtgtg----cccttctctacttccatgcttccagcttcttctcccttctagttc 585
Query: 383 cccagcatgagcctagaggaacagagcccccctgctatgtactcagggaacaacggaagg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 cccagcatgagcctagaggaacagagcccccctgctatgtactcagggaacaacggaagg 525
Query: 443 ctctagacccctgtgtccagagccctcctggtcttccatttggcagagagggttcaggaa 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ctctagacccctgtgtccagagccctcctggtcttccatttggcagagagggttcaggaa 465
Query: 503 acctatggctcatgactttccccatcaggaaaacctaaac 542
|||||||||||||||||||||||| |||||||||||||||
Sbjct: 464 acctatggctcatgactttccccaccaggaaaacctaaac 425
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 940
Length adjustment: 10
Effective length of query: 532
Effective length of database: 930
Effective search space: 494760
Effective search space used: 494760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
