Query= MSMg01no047_h12.b1 MSMg01no047_h12.b1 CHROMAT_FILE:
MSMg01no047_h12.b1 PHD_FILE: MSMg01no047_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:49 2005
(602 letters)
>mm_chr11_68462822_68463823
Length = 1002
Score = 1023 bits (529), Expect = 0.0
Identities = 577/611 (94%), Gaps = 30/611 (4%)
Strand = Plus / Minus
Query: 4 ggaattcttcaagactaaaggagttttccagataactgaagtttatcttgacaaaaagca 63
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 970 ggaattcttcaagactaaaggagctttccagataactgaagtttatcttgacaaaaagca 911
Query: 64 actcttgcttattttatccattttgattgcaatgtgtcaaaaatgttacattccagtgct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 actcttgcttattttatccattttgattgcaatgtgtcaaaaatgttacattccagtgct 851
Query: 124 gtgccggttttttgttttgtttag------------ttttttttttttttttgtcttctt 171
|||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 850 gtgccgtttttttgttttgtttagttttttttttttttttttttttttttttgtcttctt 791
Query: 172 tgtcttcaagctaccagatggttggctaaggctatgaagaacagaacagatttgtcttca 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tgtcttcaagctaccagatggttggctaaggctatgaagaacagaacagatttgtcttca 731
Query: 232 gccccctcccatcttctattcactgtaaggatgtgtttaaaaacaaagagagagagagag 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gccccctcccatcttctattcactgtaaggatgtgtttaaaaacaaagagagagagagag 671
Query: 292 agagagagagagagagagagagagactacaatgcagaagctagaaaaaccaagtagctga 351
| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 a-----------------a-agagactacaatgcagaagctagaaaaaccaagtagctga 629
Query: 352 ctaaggaattattagaggttgggaacggctagaggagtattaaaagagacactggatata 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctaaggaattattagaggttgggaacggctagaggagtattaaaagagacactggatata 569
Query: 412 atcagtgtacactgtatgcatgtattacactgaaccccattcatattcataatttttgag 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 atcagtgtacactgtatgcatgtattacactgaaccccattcatattcataatttttgag 509
Query: 472 acaggatctcaggtcagtcctagattccatcctcctgccttagtctcctaagtccctagc 531
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 508 acaggatctcaggtcagtcctagattccatcctcctgccttagcctcctaagtccctagc 449
Query: 532 ttctctaaataaataaattaaaagataaataaatgaataaataaataaatactcgagagc 591
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 448 ttctctaaataaataaattaaaagataaataaatgaataaataaataaataatcgagagc 389
Query: 592 cagtgagatgc 602
|||||||||||
Sbjct: 388 cagtgagatgc 378
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_h12.g1 MSMg01no047_h12.g1 CHROMAT_FILE:
MSMg01no047_h12.g1 PHD_FILE: MSMg01no047_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:49 2005
(616 letters)
>mm_chr11_68437508_68438523
Length = 1016
Score = 874 bits (452), Expect = 0.0
Identities = 557/628 (88%), Gaps = 61/628 (9%)
Strand = Plus / Plus
Query: 1 aaagaaatggaactcacagacaaaatcccctcatttccagaactgggaacgctcaccctt 60
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aaagaaatgggactcacagacaaaatcccctcatttccagaactgggaaggctcaccctt 260
Query: 61 cccatctgaccaaggctggcaaaggtgcccccagcattccctgggtgcaattgaaactga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccatctgaccaaggctggcaaaggtgcccccagcattccctgggtgcaattgaaactga 320
Query: 121 tttgaaggggtcaagtttggtgacacaggaagctggcccttcagagtctaaaagtacgga 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgaaggggtcaagcttggtgacacaggaagctggcccttcagagtctaaaagtacgga 380
Query: 181 atcccagtccatatccaaggacccccaaaagcacagcagaaaccatcctctgctccgcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 atcccagtccatatccaaggacccccaaaagcacagcagaaaccatcctctgctctgcca 440
Query: 241 ttttatttatttatttatttatttatttatttatttatttatttatttatttatttggac 300
|||| ||| ||| |||||||
Sbjct: 441 tttt-ttt-ttt-----------------------------------------tttggac 457
Query: 301 cattcttcgctttctatgcctagcccaaagcagtgaggagtctccaaggttacccaggcg 360
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 catttttcgatttctatgcctagcccaaagcagtgaggagtctccaaggttacccaggct 517
Query: 361 ccaaaagtacaactgcaaagagctgttaccctgcaagggctgatgctgcaggcccagagc 420
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 518 ccaaaagtacaactgcaaagagctgctacccagcaagggctgatgctgcaggcccagagc 577
Query: 421 ttacctgatgacacagggc-----g-----tgaggaggtaagctttcagatgctctcagg 470
||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 578 ttacctgatgacacagggcttaacgactcttgaggaggtaagctttcagatgctctcagg 637
Query: 471 gcatccaaatcttgg--atggcaagggcaaggaggacaccaagagccttggcatcctgag 528
||||| |||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gcatc------ttggcaagggcaagggcaaggaggacaccaagagccttggcatcctgag 691
Query: 529 agtaagcacactgcaaataaaatgtggtttctgatttgctgcaaataagaggtctgcttc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 agtaagcacactgcaaataaaatgtggtttctgatttgctgcaaataagaggtctgcttc 751
Query: 589 cggcagagcacttccagggtgtctggct 616
||||||||||||||||||||||||||||
Sbjct: 752 cggcagagcacttccagggtgtctggct 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
