Query= MSMg01no048_b10.b1 MSMg01no048_b10.b1 CHROMAT_FILE:
MSMg01no048_b10.b1 PHD_FILE: MSMg01no048_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:38 2005
(656 letters)
>mm_chr11_67448244_67449299
Length = 1056
Score = 1176 bits (608), Expect = 0.0
Identities = 644/656 (98%)
Strand = Plus / Minus
Query: 1 ctgcaggagacactagactgggtgctgaggccagcaccctgtttataacccggcacagct 60
||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||
Sbjct: 856 ctgcaggagacactagactgggttctgaggccagcaccctgtttataaacaggcacagct 797
Query: 61 ctgcctcctttcagtcccagcatgccttgcaggtgcttcttcaactccacttcatcagag 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 796 ctgcctcctttcagtcccagcatgccttgcaggtgcctcttcaactccacttcatcagag 737
Query: 121 aattcagagtccccctgaggctttccggaagagtagttttaaagaatgaccacttgttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 736 aattcagagtccccctgaggctttccggaagagtagttttaaagaatgaccgcttgttcc 677
Query: 181 agaaacttctgtctggccagttggtccttactgtatgtcttggctgtctagtatgtagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 agaaacttctgtctggccagttggtccttactgtatgtcttggctgtctagtatgtagat 617
Query: 241 tgtgttcccaaagatgaagttcatggtgcattttctcctatggctgtgattggatgaaag 300
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 616 tgtgttcccaaagatgaagttcatggtgcattttctcctatggctgtgatcgggtgaaag 557
Query: 301 cctaggacagcatggtgggaatcagactcttcaaacaccaggatcacaggttctaaaggc 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 556 cctaggacagcatggtgggaatcagactcttcaaacaacaggatcacaggttctaaaggc 497
Query: 361 tttgcagccccatttcacaagggagcaccatactctcccccgctgacgacaactgggagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tttgcagccccatttcacaagggagcaccatactctcccccgctgacgacaactgggagg 437
Query: 421 tctcacttaggttgtggagcaggcttccagcctgactactttctagtccgtgatgtacga 480
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 436 tctcatttaggttgtggagcaggcttccagccttactactttctagtccgtgatgtacga 377
Query: 481 gagccctgctcccgaggggcagagggacctagagttccctgacctatggctgagcttgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gagccctgctcccgaggggcagagggacctagagttccctgacctatggctgagcttgag 317
Query: 541 ggctcgggttggaaccctgcaagggcctctgctcaggcgagacatagctgtctgctacat 600
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 316 ggctcgggttggaaccctgcaagggcctctgctcaggggagacatagctgtctgctacat 257
Query: 601 attctccagatttacttcttctcaggctcctcccaaatcctggcaggtcccaggta 656
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 256 attctccagatttacttcttctcaggctcctcccaaatcctggcaggtcctaggta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_b10.g1 MSMg01no048_b10.g1 CHROMAT_FILE:
MSMg01no048_b10.g1 PHD_FILE: MSMg01no048_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:38 2005
(746 letters)
>mm_chr11_67343918_67345063
Length = 1146
Score = 1323 bits (684), Expect = 0.0
Identities = 730/746 (97%), Gaps = 3/746 (0%)
Strand = Plus / Plus
Query: 1 ggattcgggtgtggtggcatcatttctgtcctcttaagtctttccacccatggggctgga 60
||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 201 ggatttgggtgtggtggcatcatttctgtcctcttaagtctttctagtcatggggctgga 260
Query: 61 ggtagagctagagcctggaatgctagagagatgccttaagccggcacagcccagaagagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtagagctagagcctggaatgctagagagatgccttaagccggcacagcccagaagagc 320
Query: 121 ttcctgtggcaacagaaaccttctgtttgtgtcactaccatgtgcttggtcacactgggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcctgtggcaacagaaaccttctgtttgtgtcactaccatgtgcttggtcacactgggg 380
Query: 181 acatggtaaaagggactgaggaaaggggtctttacatttatttaatttggattaacttag 240
|||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 acatggtaaaagggaccgtggaaaggggtcttcacatttatttaatttggattaacttag 440
Query: 241 atttaaatagcagtagccatatcagatatagcccagctccaaggcatacacgtttaagga 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 gtttaaatagcagtagccatatcagatatagcccagctctaaggcatacacgtttaagga 500
Query: 301 caagaataggacagtaaaagccttttagtggggccaagtatggtggaatacacatgtctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagaataggacagtaaaagccttttagtggggccaagtatggtggaatacacatgtctt 560
Query: 361 taacccaacacgtaagagttggaggctagtgcatctctgtttactcagggccagcctaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taacccaacacgtaagagttggaggctagtgcatctctgtttactcagggccagcctaac 620
Query: 421 ttacatagggagttgcagtacagctagggttacatagtgagatcttgtcctccaaaaaag 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 ttacatagggagttgcagtacagctagggttacatagtgagatcttgttctccaaaaaag 680
Query: 481 gaaaataaaaataataaataaattaattaattattaattaattaaaaaggggtctcatgt 540
||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||
Sbjct: 681 gaaaataaaaataataaataaataaat-aa--attaattaattaaaaaggggtctcatgt 737
Query: 541 agcctaggctggcctcaaactctcatgtagctgaagacaatctgaacttctgcctctaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 agcctaggctggcctcaaactctcatgtagctgaagacaatctgaacttctgcctctaca 797
Query: 601 catatgtattggcacgtgtgccctcccaaacaaacaaaaacaaataaaaacattaaaaaa 660
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 798 catatgcattggcacgtgtgccctcccaaacaaacaaaaacaaataaaaacatttaaaaa 857
Query: 661 aaaaagaggagctatgtaaatttccatagaaaggccataaacttagtggcttaagcaaca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 aaaaagaggagctatgtaaatttccatagaaaggccataaacttagtggcttaagcaaca 917
Query: 721 catttctccacttataatttggaaga 746
||||||||||||||||||||||||||
Sbjct: 918 catttctccacttataatttggaaga 943
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 746
Length of database: 1146
Length adjustment: 10
Effective length of query: 736
Effective length of database: 1136
Effective search space: 836096
Effective search space used: 836096
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
