Query= MSMg01no049_d05.b1 MSMg01no049_d05.b1 CHROMAT_FILE:
MSMg01no049_d05.b1 PHD_FILE: MSMg01no049_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:58 2005
(556 letters)
>mm_chr11_68346519_68347474
Length = 956
Score = 1036 bits (536), Expect = 0.0
Identities = 542/544 (99%)
Strand = Plus / Plus
Query: 12 aaaaaaaaaaaagacaaataaatacaaacaaaacaaaagaaagaaaaacaaaagaagaaa 71
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 212 aaaaaaaaaaaagacaaataaataaaaacaaaacaaaagaaagaaaaacaaaagaagaaa 271
Query: 72 tagatttactgagtagcctcaatgggaggaaacagtaatgactaaaggactgtggtggcc 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tagatttactgagtagcctcaatgggaggaaacagtaatgactaaaggactgtggtggcc 331
Query: 132 tttgtggagcatcccatgggggttctgttcatatggacagtatttgagaaacaggagtcc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tttgtggagcatcccatgggggttctgttcatatggacagtatttgagaaacaggagtcc 391
Query: 192 tgtcctctcaacttcaggtgtctttgccatcctcatgctccctgttctcctgtcccaggg 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgtcctctcaacttcaggtgtctttgccatcctcatgctccctgttctcctgtcccaggg 451
Query: 252 aaggaactggtactcttcctccgcccacgctcgcagctgcgcctcagtgctgatctggat 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aaggaactggtactcttcctccgcccacgctcgcagctgcgcctcagtgctgatctggat 511
Query: 312 gccttggatctacaaggatttaggctagaccgggacttggcccgggtgtccaccgacagt 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gccttggatctacaaggatttaggctagaccgggacttggcccgggtgtccaccgacagt 571
Query: 372 ggaattgagcgggacctccctttggggagcgatgagcttccggaccccagcagctctgag 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ggaattgagcgggacctccctttggggagcgatgagcttccggaccccagcagctctgag 631
Query: 432 atggagcgggccacccttcaacgcaaggggggcatcaagaagcgtgtgtggccccctgac 491
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 atggagcgggccgcccttcaacgcaaggggggcatcaagaagcgtgtgtggccccctgac 691
Query: 492 ttcttcatgcctggcagctgggatgggcccccggggttgcatcggaggactggcaggcct 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttcttcatgcctggcagctgggatgggcccccggggttgcatcggaggactggcaggcct 751
Query: 552 agtg 555
||||
Sbjct: 752 agtg 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no049_d05.g1 MSMg01no049_d05.g1 CHROMAT_FILE:
MSMg01no049_d05.g1 PHD_FILE: MSMg01no049_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:58 2005
(309 letters)
>mm_chr11_68368332_68369040
Length = 709
Score = 514 bits (266), Expect = e-150
Identities = 299/324 (92%), Gaps = 24/324 (7%)
Strand = Plus / Minus
Query: 1 gtcatgagaaatggctccagatttt------tccctttaacagaggcatttcctctctca 54
||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 611 gtcatgagaaatggctccagatttttttctctccc-----cagaggcatttcctctctca 557
Query: 55 actgaactaagattcgagcccttgaaatcatggggggg-------------ggtgtacca 101
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 556 actgaactaagattcgagcccttgaaatcatggggggggggggggggaggaggtgtacca 497
Query: 102 taggctttcctccagaatggccaactatccagctacagatgcgggaattatttgttctca 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 taggctttcctccagaatggccaactatccagctacagatgcgggaattatttgttctca 437
Query: 162 gacctagggtctccatctctaccactgagctgtatcccagctctgatttggtccattcat 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gacctagggtctccatctctaccactgagctgtatcccagctctgatttggtccattcat 377
Query: 222 ttttcattcaaggcttgctcaatgcacctaatttggctgtggattggagagtggggggtg 281
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 376 ttttcattcaaggcttgctcaatgcacctaatttggccgtggattggagagtggggggtg 317
Query: 282 tttgccagccaatatgtatgtgta 305
||||||||||||||||||||||||
Sbjct: 316 tttgccagccaatatgtatgtgta 293
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
