BAC Information

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BAC

Clone NameMSMg01-049F24
Chromosome11 (Build37)
Map Location 39,770,269 - 39,770,861
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049F24.T7 (MSMg01no049_f24.b1)MSMg01-049F24.TJ (MSMg01no049_f24.g1)
ACCAG278853AG278854
length1,2561,215
length of high quality
(start - end)
635 (71 - 705)669 (80 - 748)
definitionCHROMAT_FILE: MSMg01no049_f24.b1 PHD_FILE: MSMg01no049_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:19 2005CHROMAT_FILE: MSMg01no049_f24.g1 PHD_FILE: MSMg01no049_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATGGGGCTATAGACTACTAAGGGAGAGGATCCGCGGAATTACCCTTT
CTAATTGGACCCTTAATTTCAACAATAGTTCAGTTCTTGTTATGTGTTTT
CTGAGTATGTGTTGCTTAAGATTGGCATCCATGAAATAAAAATGGCATCC
CCATTGTGGGGAATCCCAGGCGAATTAATACATTTAAAGCAACCTGAGAT
AAGACAGCTGGAAGTTAATAAAGTTAGGGGAACTGTTTTAGGGAGAAAAT
AATTCATATGCTAAGGGCATGGTTGGTGAAGCAAATAAAAAAAAGTACAG
TTTCACACAGTTATCACTGGAGTTTGGGTTTCTAAAATCTGCAGGCCCTT
TTGAATTGAAAAGGTACCTCCAATATAAGATGTCATTGGGCCTGTTTAGA
TCCAACACAATTCAAACATTAGGTCAATGGAGACAACAAAGATGTATTGT
AATTAAGCTATTGCTAATCCATCAGGGCTGCAGGACAGACACAGGAACTA
AACTGCAACCCCAACCCCACCCTGAGCCAGAGTGTTACAGAGCTTTTAAT
CTTAAAAACCACAAACATCTATGCCAAATTGCAAGTATATTTTCCCACCA
ATCAGGGCTTAGAAATAGAGGACTTCCTTAGGAACATTTCTCTGAGGTAA
ACTTATCCTCGTCTCATTGGTTTTTTTTTTTTGTTTGTTTTGTTTTGTTT
TTTGTTGTTGTTTTTCTTTTTGTTTTTTTGTTTGCTTGGTACTGATATTT
TCCTAATCTTATTTATATTTTTTCTATTTTACCTTTACCTACTTTTTTTT
TTATCTTTCTTAATTATTTTTCTTTCTATTTATTTTTCCTTTTTACCTTT
CTTTTTATCTTATATTTTTCTATATTATATCCCCATATATTTTTTCAATA
TCCTTATTTTTACTCATCTATATATTACCCTCTTTCTTCCTTTATCTTTA
TTCTTTATTCTCTCAACGTATTTTTATATCTCATTTCTTTTATACCTTTA
CACTTCTTCCCTTTTTTTCTTAACATCTCTTTCTCTTCTATCTCCCAACC
TTATCTTAATTACCTCTCTACATTCTATCTTATTTTACTCTCTACCTATT
TTTTCATTTCTCATTTATTTCTATTCAACTTATATTTTTATTATATCTCA
TCTATTACTTCATCTTCTTTGAGCTCTGATCATAACTCTTTATTCATTTT
TATTATTTCTTAACCTCTCTATACTCTAATCTGTCTTATATATCTATCAT
CTATAC
NNAAAACGATGGTAACTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCTATTCTCATCAACCACATGGTGCCTCACAAC
CATCCATACTGAGATCTGACACCTCTTCTCTTGTGTTTGAAGACAGCTAC
AGTGTTCTCATATAAATAAAAATAAATAAATAAGTCTTAAAAAAACCCTA
AGCCTATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA
TAAATAAATAAAAATCTAAGCCTACAACTCCCTCAAATTCTCCTCCATCT
TTTACTCCTGCACCTTTGTAAGGCAGGACAAATTGAGTCAAAGTTTGTAT
TGCTGGGTTGGTGTCCTTACCCCTCAATTGTCTTGTCTGGTTGCAGTAGA
TAGCTGCTTCTGACTCCATATCCCTCATTGCTAGAAGTCTTGGCTAGAAC
TTCTGGGAGTTTTTATTGTATTTGGTTTCTAGCTCATCCCAGAGATGCTC
CCCAGCCCAGTTATCTCTTCCAGTATTCTCTCCCTACATCCTCCCTACAT
CTCATCCCTCCTGGCCCCAATCTTGCCCCTCCCCCACTAAGTTTCCTCCC
TCAATTCCCCCCTGATGTTGTCTAACTTATTTTCCCTTCTCAGAGATATT
CCCCTCTTGGGCCATCCTTGTTACTCAGCTTCTCTGGTTCTGTGGTTTGT
AGCATGGGCAGCCCTGTACTTTATGACCAATCTCCACTTACTTTTATCCT
AATATTACTCTGCTGTGGTTCTTCATTGAACTTAATAATATAAATTACCT
CCCTGAAAAGAACTATTTTGTGCTCCATGCCCTTGAAAGGTTGTATGTTG
AAAAAAATCCTTTCATTGCTTTTGAAAAAACCTTAATCCAGGTCGCATTA
ATTTAAGGGGAAATTACCTTTCCCTTACTCATTAAGGGNAAAAAACTGGA
ATGCTGAATGGAAAAAATTTCTCCACGGCTGGGTTGGCCCGGCTTCATTC
TTTGAATTCTAAGGGAATTTCTTTAACTTCCCCCTGGAACCCTTTCTTTT
TTAAAAGCTTTTAACTTATAATTTAAAAACCCCCCCCCCACTTTTAAAAA
AAAGTTTCTCGTGGTACCAGATAAAAAACCCACCGGTTTATAAAAGTTGT
CTCCCTTACAATCCCCGAAGATTTTATAAATATTTCTATATATCACCCTC
NTAACTCTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_f24.b1 MSMg01no049_f24.b1 CHROMAT_FILE:
MSMg01no049_f24.b1 PHD_FILE: MSMg01no049_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:19 2005
         (635 letters)



>mm_chr11_39770269_39771303
          Length = 1035

 Score = 1147 bits (593), Expect = 0.0
 Identities = 593/593 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaatagttcagttcttgttatgtgttttctgagtatgtgttgcttaagattggcatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aacaatagttcagttcttgttatgtgttttctgagtatgtgttgcttaagattggcatcc 534

                                                                       
Query: 61  atgaaataaaaatggcatccccattgtggggaatcccaggcgaattaatacatttaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 atgaaataaaaatggcatccccattgtggggaatcccaggcgaattaatacatttaaagc 474

                                                                       
Query: 121 aacctgagataagacagctggaagttaataaagttaggggaactgttttagggagaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aacctgagataagacagctggaagttaataaagttaggggaactgttttagggagaaaat 414

                                                                       
Query: 181 aattcatatgctaagggcatggttggtgaagcaaataaaaaaaagtacagtttcacacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aattcatatgctaagggcatggttggtgaagcaaataaaaaaaagtacagtttcacacag 354

                                                                       
Query: 241 ttatcactggagtttgggtttctaaaatctgcaggcccttttgaattgaaaaggtacctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttatcactggagtttgggtttctaaaatctgcaggcccttttgaattgaaaaggtacctc 294

                                                                       
Query: 301 caatataagatgtcattgggcctgtttagatccaacacaattcaaacattaggtcaatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 caatataagatgtcattgggcctgtttagatccaacacaattcaaacattaggtcaatgg 234

                                                                       
Query: 361 agacaacaaagatgtattgtaattaagctattgctaatccatcagggctgcaggacagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 agacaacaaagatgtattgtaattaagctattgctaatccatcagggctgcaggacagac 174

                                                                       
Query: 421 acaggaactaaactgcaaccccaaccccaccctgagccagagtgttacagagcttttaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 acaggaactaaactgcaaccccaaccccaccctgagccagagtgttacagagcttttaat 114

                                                                       
Query: 481 cttaaaaaccacaaacatctatgccaaattgcaagtatattttcccaccaatcagggctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 cttaaaaaccacaaacatctatgccaaattgcaagtatattttcccaccaatcagggctt 54

                                                                
Query: 541 agaaatagaggacttccttaggaacatttctctgaggtaaacttatcctcgtc 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  agaaatagaggacttccttaggaacatttctctgaggtaaacttatcctcgtc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)