Query= MSMg01no052_h23.b1 MSMg01no052_h23.b1 CHROMAT_FILE:
MSMg01no052_h23.b1 PHD_FILE: MSMg01no052_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:08 2005
(413 letters)
>mm_chr11_4873968_4874780
Length = 813
Score = 752 bits (389), Expect = 0.0
Identities = 406/413 (98%), Gaps = 3/413 (0%)
Strand = Plus / Plus
Query: 1 cagctggcaaaaaccatggccctcctagagcaggagccagtcctagccagcagccatggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cagctggcaaaaaccatggccctcctagagcaggagccagtcctagccagcagccatggg 263
Query: 61 cagtctgaagcaagccatatcctgcacctgggattaaaacaaaaacactcacaggacatg 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 264 cagtctgaagcaagccatatcctgcgcctgggattaaaacaaaaacactcacaggacatg 323
Query: 121 actagggttttttgttgttgttgttattgttgttttgtttttgtttttgcttttcgagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actagggttttttgttgttgttgttattgttgttttgtttttgtttttgcttttcgagac 383
Query: 181 agggtttctctgtgtagccctggctgtcctggaactcacattgtagactaggctggcctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agggtttctctgtgtagccctggctgtcctggaactcacattgtagactaggctggcctc 443
Query: 241 gaactcagaaatcctcctgcctttgcctcccaagtgctgggattaaaggcgtacaccacc 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaactcagaaatccgcctgcctttgcctcccaagtgctgggattaaaggcgtacaccacc 503
Query: 301 atgcctggctttttttttttttttttttcagatagcagttcttgaaaccctgagtgtagg 360
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 504 atgcccggctttttttttttttttc---cagatagcagttcttgaaaccctgagtgtagg 560
Query: 361 acagttcaagggaggggggcaagagaagtgggctccagaaggccttacagagg 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagttcaagggaggggggcaagagaagtgggctccagaaggccttacagagg 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_h23.g1 MSMg01no052_h23.g1 CHROMAT_FILE:
MSMg01no052_h23.g1 PHD_FILE: MSMg01no052_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:08 2005
(560 letters)
>mm_chr11_4951597_4952557
Length = 961
Score = 669 bits (346), Expect = 0.0
Identities = 389/408 (95%), Gaps = 13/408 (3%)
Strand = Plus / Minus
Query: 1 cagttccagc-aatccaacgcctttttctggcctccctgagcacgcgcaccacacatgca 59
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 830 cagttccagcaaatccaacgcctttttctggcctccctgagcacgcgcagcacacatgca 771
Query: 60 cacaaataaggaagaaagagccgggcgtggtggtgcacgcctttaaccccagcacttggg 119
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 770 cacaaataaggaagaaagagctgggcgtggtggtgcacgcctttaaccccagcacttggg 711
Query: 120 agacagaggcaggaggatttctgagttccaggccagcctggtctacagagtgagttccag 179
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 710 agacagaggcaggaggatttctgagttccaggccagcctggtctaaagagtgagttccag 651
Query: 180 gacagccagggttacacagagaaaccctgt--c---tcaaaaaaaaaaaaaaaaaa---- 230
||||||||||| ||||||||||| |||||| | ||||||||||||||||||||
Sbjct: 650 gacagccagggctacacagagaa-ccctgtttcaaatcaaaaaaaaaaaaaaaaaaaaaa 592
Query: 231 -gacatggaagaggaaagaagtttcaaa-tgaagagaagtgaagacaaatgaatagaaag 288
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 591 agacatggaagaggaaagaagttacaaaatgaagagaagtgaagacaaatgaatagaaag 532
Query: 289 taaccaacaaccacctaaaagaaataggtaaaaagtataaaaatagttccagagaagagc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 taaccaacaaccacctaaaagaaataggtaaaaagtataaaaatagttccagagaagagc 472
Query: 349 agttgcccagaaatactggaatataggccaatttaagatccactactg 396
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 471 agttgcccagaaatactggaatataggcccatttaagatccactactg 424
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 961
Length adjustment: 10
Effective length of query: 550
Effective length of database: 951
Effective search space: 523050
Effective search space used: 523050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
