XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAGTGGATACCCATTTGCTGGGCAGAACTTTGCCACTGTGCGTAAGAACT
AGCAGCAACTGTGATTACTTTCATTAGATCTTCACAAGACACCCTACCTA
CAATCTGTCATGGATAGAGGTACGCATATGGGACCCTACTTCTTCCTGTT
GAGCTTCTAGCTGGTGGACTCAAGAACAAGGCGTGTGGATGGAGGGGACA
TTGTGTCGAGGTGTGTAACCATCAATAAGTTCACTGGGTTCCAATGGCCA
ATCCTAGTTTCTGGTCACTCTGTATAATACATCTTATTTTAAAGCCAATC
TTGGGAATTCTCTTTATCTTAAAATAGATGAGGTTTGCCAAGCTTGTTGG
TCAGGTTAATATCTGAGCAATAATGTATATGTGTGGGACTGTGAAAGGCA
GTCTGGTTTCTGGTTGAGCTTGTTTTGAAACCTCAGTGACACTGCCGGTG
ATCCTGCAAGGGTCGGTAGACATTTTTCCATGCTCCTGTATACCAGGCCC
CTGACAGGAGGCAGCAGTCTCCATAGGTCTGGCCATCATTCACACAAGGG
CAATGCCCGGAGCCCCTTCACAGGTTGAAAACATGATCACAGGTCACCAG
ATCTCCGTTTTAATGAGGTATCTAAAGGCCTGAAGGGCTTAGCCAATTAG
GCTCCCCT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTCCACAGGTTTCTATTTATTTATTTATTT
ATTTATTTATTTATTTATTCCCCTTTCAATTTTTTATTAGATATTTTCGT
CATTTACATTTCAAATGCTATCCTGAAAGTGCCCTATATCCTCCCCCTGC
CCTGCTTCCCTACTCAGTCACTCCCACTTCTTGGCCCTGGAGTTCCCCTG
TACTGGGGCATATAAAGTTTGCAAGATCAAGGGGCCTTTCTTCCCAACGA
TGGCCAATTAGTCCATCTTTTGTTTTATATGCAGCTAGAAACATGAGCTC
TAAGGGTACTGTTTACCCCACACGCCTCCTGATATGTCAGAGTCATTGTG
GCTCAGATCCTGTATTAGAAAAGAGCAGTAGAAAAAGTGTAGCCACTGAC
ATGCTTGCTTGACGTATGTGTGACTAACAGCATTCCGCAGGCTAGGGCAT
CTGTGAGTCACTTGGTTTCTGATTCCAAAATAGCATACCATTGCACCACT
GAACTGGAACTTTCTGCTTATGCCACATGATGCCCACTTACATGATGCTT
TGCTCGGCAACACACCCTGACGTAACCAACCCACCACTGCTTGCCCCCAT
CTCCATCCTTTCCTCTCTTACCTTGCAAGGCAACATCCATAATCATTCGA
ATCCCTTCT

Query= MSMg01no052_i08.b1 MSMg01no052_i08.b1 CHROMAT_FILE:
MSMg01no052_i08.b1 PHD_FILE: MSMg01no052_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:10 2005
         (653 letters)



>mm_chr11_14458844_14459896
          Length = 1053

 Score = 1127 bits (583), Expect = 0.0
 Identities = 627/649 (96%), Gaps = 12/649 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagtggatacccatttgctgggcagaactttgccactgtgcgtaagaactagca 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagtggatgcccatttgctgggcagaactttgccactgtgcgtaagaactagca 264

                                                                       
Query: 65  gcaactgtgattactttcattagatcttcacaagacaccctacctacaatctgtcatgga 124
           ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 gcaactgtggttactttcattagatcttcacaagacaccctacctaccatctgtcatgga 324

                                                                       
Query: 125 tagaggtacgcatatgggaccctacttcttcctgttgagcttctagctggtggactcaag 184
           ||||            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taga------------ggaccctacttcttcctgttgagcttctagctggtggactcaag 372

                                                                       
Query: 185 aacaaggcgtgtggatggaggggacattgtgtcgaggtgtgtaaccatcaataagttcac 244
           |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 373 aacaaggcatgtggatggaggggacattgtgtcgaggtgtgtaaccatcagtaagttcac 432

                                                                       
Query: 245 tgggttccaatggccaatcctagtttctggtcactctgtataatacatcttattttaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgggttccaatggccaatcctagtttctggtcactctgtataatacatcttattttaaag 492

                                                                       
Query: 305 ccaatcttgggaattctctttatcttaaaatagatgaggtttgccaagcttgttggtcag 364
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 493 ccaatcttgggaattctctttatcttaaaatagatgaggtttgccaagccagttggtcag 552

                                                                       
Query: 365 gttaatatctgagcaataatgtatatgtgtgggactgtgaaaggcagtctggtttctggt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gttaatatctgagcaataatgtatatgtgtgggactgtgaaaggcagtctggtttctggt 612

                                                                       
Query: 425 tgagcttgttttgaaacctcagtgacactgccggtgatcctgcaagggtcggtagacatt 484
           |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 613 tgagcttgttttgaaacctcagtgacgctgctggtgatcctgcaagggtcggtagacatt 672

                                                                       
Query: 485 tttccatgctcctgtataccaggcccctgacaggaggcagcagtctccataggtctggcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tttccatgctcctgtataccaggcccctgacaggaggcagcagtctccataggtctggcc 732

                                                                       
Query: 545 atcattcacacaagggcaatgcccggagccccttcacaggttgaaaacatgatcacaggt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 atcattcacacaagggcaatgcccggagccccttcacaggttgaaaacatgatcacaggt 792

                                                            
Query: 605 caccagatctccgttttaatgaggtatctaaaggcctgaagggcttagc 653
           |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 793 caccagatctccattttaatgaggtatctaaaggcctgaagggcttagc 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)