Query= MSMg01no052_n17.b1 MSMg01no052_n17.b1 CHROMAT_FILE:
MSMg01no052_n17.b1 PHD_FILE: MSMg01no052_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:36 2005
(238 letters)
>mm_chr11_65274578_65275216
Length = 639
Score = 389 bits (201), Expect = e-113
Identities = 235/259 (90%), Gaps = 22/259 (8%)
Strand = Plus / Plus
Query: 1 attcttaggctctgtttcaccacagattgtttgttctaagtgtttccctagaacacagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcttaggctctgtttcaccacagattgtttgttctaagtgtttccctagaacacagta 260
Query: 61 tgctctctcctttgcagactcaactgttttttttt-ccactctctcaacggacagattct 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 261 tgctctctcctttgcagactcaactgttttttttttccactctctcaacggacaggttct 320
Query: 120 tactgcactttctactctctgtgtgctgcccctattgtctgtt----------------- 162
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactgcactttctactctctgtgtgctgcccctattgtctgtttcgtctatttacaaact 380
Query: 163 ---gtctagttgctttgctactttttgaattttaaagaatgtttcattggtgtataataa 219
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgtctagttgctttgcaactttttgaattttaaagaatgtttcattggtgtataataa 440
Query: 220 atgtgcattggttttgggg 238
|||||||||||||| ||||
Sbjct: 441 atgtgcattggttt-gggg 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 639
Length adjustment: 9
Effective length of query: 229
Effective length of database: 630
Effective search space: 144270
Effective search space used: 144270
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no052_n17.g1 MSMg01no052_n17.g1 CHROMAT_FILE:
MSMg01no052_n17.g1 PHD_FILE: MSMg01no052_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:36 2005
(414 letters)
>mm_chr11_65432484_65433297
Length = 814
Score = 698 bits (361), Expect = 0.0
Identities = 400/413 (96%)
Strand = Plus / Minus
Query: 2 aaacccttcaaggactgagggggaagctgagggtgggcgactgcacggagacacttgtga 61
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 614 aaacccttcaaggactgagggggaagctgagggtgggtgactgcagggagacacttgtga 555
Query: 62 agacagaggaatgaactttgtagttgagggtactgggggcagggagggcagtggttagaa 121
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 554 agacagaggaatgaactttgtggttgagggtgctgggggcagggagggcagtggttagaa 495
Query: 122 tagtcaagtgtagaggcctacggagttaggggaagaaagctgttaatgttccagaaagag 181
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 494 tagtcaagtgtagaggcctacggagttaggggaagaaagctgtcaatgttccagaaagag 435
Query: 182 caattgagtctgcagcagtgcgctaggttcaagtaggacacggtgatgggctaagggctc 241
||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 434 caactgagtctgcagcagtgcactaggttcaaataggacacggtgatgggctaagggctc 375
Query: 242 tgtatagagtctccctttgtttggagagttcagaactttgagcagcagggcgtagctatg 301
|| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 374 tggatagagtctccctttgtatggagagttcagaactttgagtagcagggcgtagctatg 315
Query: 302 aaacacaagttggcagggaggtaggaggtggtagacagtctggcttcatcagggatgcag 361
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 314 aaacacaagttggcagggaggtaggaggtggtggacagtctggcttcatcagggatgcag 255
Query: 362 gcttccataggctccatcgctgactaggattgtgaggctgttggtatgctctg 414
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gcttccataggttccatcgctgactaggattgtgaggctgttggtatgctctg 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space: 326025
Effective search space used: 326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
