BAC Information

Click to search

BAC

Clone NameMSMg01-053F18
Chromosome11 (Build37)
Map Location 27,595,773 - 27,596,010
singlet/doubletsinglet
Overlap geneLOC100042377
Upstream genePpia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
Downstream geneEG626571, Ccdc85a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053F18.T7 (MSMg01no053_f18.b1)MSMg01-053F18.TJ (MSMg01no053_f18.g1)
ACCAG281595AG281596
length747700
length of high quality
(start - end)
---237 (73 - 309)
definitionCHROMAT_FILE: MSMg01no053_f18.b1 PHD_FILE: MSMg01no053_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:15 2005CHROMAT_FILE: MSMg01no053_f18.g1 PHD_FILE: MSMg01no053_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCATAATTTGCGGCCGCTATACGATCCTATTCAAAAAGGATGCGTGG
AATTATTATTTCCACATAAACTGTCTGAAAGGCAGGATGCTGATCTCTGC
TTTATGACACGTGTATATGACAATCTCTCGATGAGAATGGTTAGCCCTGA
AACTCCCTGGACAGTTTCTATTTACCTTCTCTAATAAGGTAGACATGTGC
TCATTATCACCTCAACGTACATACCCCATGAACTGACCAACATAGTATGT
CTTTTTAAAACCCATTTTCTTTCTATTGCCCTTGCATTCTATTATTATCC
TTCAGTATAATGTATATGTTTTTTGTCTCACAAATAACCTCTCTACCTGG
TTGATATTAAGTTCTTACGGCCGTATTTTGTTATCTCTCGCGAGAGTTGC
TTCATTCTAATAACCCTTGATTTCATATACCACCCCCAGTCTTACTCTTA
TCTCAAATCTCCTCACCTCCCTATACTGACCTTGATTCGTTTCGTTTTCT
ACCTCTCTCTCCTTTGCCCCTCTTATCTTTTTGACATTTCCTAACTCCAT
TCCGTTACTCTCCTTCCCCTATACTCTATCGATTTTGTTTCCCCTTTATC
GCTCCCCCTATTCTCTTGCTCTACCATTTTTACTCCTATCCCATTCCTAA
CCCCGCACCAATATATTCTCTATCCCGCCCCTTCTCATTGCTCCTACTCC
CACCCCCCCCAAATACTTTTTCTATCGTCCTCCTTCCCCATTTCACG
TATCGATGAAGTGGGAGGCCTGGAGGCGCCTTTTCTCACCGGGAGGTGAC
CTATAGAATGTCAAAAGAAATCTACTGCTAGAAACAATACAGACTAAACT
CAACTCTTGAGGAAGACCATTAGGCCATGACAAATTTTGGTCAAGCACCA
TAAAATAAAAAAGCACATATATTTTTAGTTTCTACACAAATTAAAACTAT
AAGGCACAGATAATTTAAACAAATTTATAATAAATAATGTGTTTGAATCT
TCAGTGAAAAGCTTGCTCATCATGAAATTCCCTCAACACAATGAATGTAC
TCCTGGTTTCTATTTATTTTATAAGGAGAATCTAATACCAATACTTCTCA
AGCATCTCTATCCCCCACCCACAAAAGGAAGGTTAACAAATCCATGATGC
CAATGTAACTTTGATATGAACCCCAGACAAAGAAACATACTCTCATCTAT
ACCTGCACACATGCACAACTAAAGCGATCCGACACATAACATAACATGCA
TAATGCTTCTCTTGATGAATATGGTTGATTAACCCTCCATAAAATTACTA
ACCAATGAATTCTCGCCTATCTCGAAAATAACACCCTGCCGCATTATCTT
ACTTCCTATCTGATATGTGATTATCATTTCAATTTCTATACCCCCCCCCC
TTATTTTTTACAAACACCCTCTTACCAGCCTAAAACACTGAACTTTCTAC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_f18.g1 MSMg01no053_f18.g1 CHROMAT_FILE:
MSMg01no053_f18.g1 PHD_FILE: MSMg01no053_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:15 2005
         (237 letters)



>mm_chr11_27595673_27596310
          Length = 638

 Score =  387 bits (200), Expect = e-112
 Identities = 229/240 (95%), Gaps = 5/240 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactgctagaaa-caatacagactaaactcaactcttgaggaagaccattaggccatgac 59
           |||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 338 tactgctagaaaccaatacagactaaactcaactcttgaggaagaaaattaggccatgac 279

                                                                       
Query: 60  aaattttggtcaagcaccataaaataaaaaagcacatatatttttagtttctacacaaat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aaattttggtcaagcaccataaaataaaaaagcacatatatttttagtttctacacaaat 219

                                                                       
Query: 120 taaaactataaggcacagataatttaaacaaatttataataaataatgtgtttgaatc-- 177
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |  
Sbjct: 218 taaaactataaggcacagataatttaaacaaatttttaataaataatgtgtttgaagcag 159

                                                                       
Query: 178 ttcagtgaaaagcttgctcatcatgaaattccctcaacacaatgaatgtactcctggttt 237
           |  ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 158 t--agtgaaaagtttgctcatcaagaaattccctcaacacaatgaatgtactcctggttt 101


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 638
Length adjustment: 9
Effective length of query: 228
Effective length of database: 629
Effective search space:   143412
Effective search space used:   143412
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)