BAC Information

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BAC

Clone NameMSMg01-053G11
Chromosome11 (Build37)
Map Location 99,547,692 - 99,547,936
singlet/doubletsinglet
Overlap genenone
Upstream genePsmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922
Downstream geneLOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053G11.T7 (MSMg01no053_g11.b1)MSMg01-053G11.TJ (MSMg01no053_g11.g1)
ACCAG281629AG281630
length813701
length of high quality
(start - end)		---245 (76 - 320)
definitionCHROMAT_FILE: MSMg01no053_g11.b1 PHD_FILE: MSMg01no053_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:18 2005CHROMAT_FILE: MSMg01no053_g11.g1 PHD_FILE: MSMg01no053_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:18 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATTTTTTTTTGNNNCNTNNTTAAAATTNTTTTTCAGAGAAGGGGGGGGGG
NGGNNCGGTTTTCCAAATAAAGGGGGGTGTGGTAGGTAGTCTGTGAGTTC
GTTAATCGTTTTTGTGGTCCCAGGGTGTTATTTAGGGTTATTGGGAGGGA
TGGGTAGGCGGATGGGAGTGTCAGTAAGTTTTTTGATAGAGCATGAACGA
CGGGACGGGGCGCGGGGGTTGAGGTGGGTGGAACGGTGTCTGGTTGTGCT
TATTTAAAACTTTTCGTTGCGTCTATCCTAGCTTTCCCTGCTCGGCCATC
CCCCTTTCCCCTCTTTCTAGTCTCTTCTTTTTATACCACAAAATTTATAA
ATAGACCAATTGAACGATATAATATCAAATATCCGCAAGCTAAGAGGCAG
AGGTCGAACAGTGTGGAGGACCTAAAAGGTGCTATAAACACCAAAATTTT
ATGGAGATGTTATGATACAGATAGCATACTTTTACTAGAACCGATATTAC
TAAGGAGACGGGGAGGAAGCCTCGGACTCTTTGTGTCAGTAAGCGGGAAC
AAGCATATGGAACCAGACGAGGTTAGCTGGCGTGATGTGCGTTGATGCAA
TTTATACGACATAGTAATGACATAGATAGACCACAAAAAGACAAGTATAT
ACAATGAGACATAGGATAGGGGGCGCTGCAGGCTGCACGTGAACGGCGCG
AATCCAAGACACTCCACACGGGAGTGTAAGGACTCACCCACAAGAATATA
AGAAGATACATAGAGAGCAGAGGGTATAGACGATTAAAGCCGCGACAGGA
GCGTTGACGTGCG

ACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAAGGAATGTCCTAATATCCAAAA
CATGGATCTTTGACAATACACATTTAGAGCAAACCTGAGATTCTCTAATA
CATTTGCCTGCTCTTTCTTTCAGTAGCTGCACATTAGAAACAACACTCTA
GCATCGTGTTTAAGAGAACTGACATAAATAAATCATGTGCTTAGGGTCAT
TTGGCAAGTGGGGACAATGATCCTTAGTTATCTGAAGTTAGGATCCCAAG
GAAGTGCAAGTCACCCAGAAGAACTAGAAGATATGTGGCACAAATCCAGG
AAGAATCATCCAGTTTATAATCCTGGAAGAAGGAAACACTCTAGATACAT
TTCCTCCACAGACTGTCCAGAGACGAGAGGGAGTTTGTTGGGGATTTTAT
TCACCCCACTTCACTTAGCAGAATGATAATTGGGTCTAAGAGCAGATTAG
GTGCCATTCTCTCCGGTTACGAGACGAACTAAGGGAGTTTTTCGCTCTAG
CTCATCATGATGGTTGAAATTGCTTGGTATGATTCCCAGTAATCAACCAC
TTCTGCACTGTATTCCGTTCCCATATATTCCTTTCATAACCACAATCCTC
GCGAAACTTCCCCTGTTCCTTATTGGCATTAACTCCCGGCCGTCCTGGAA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_g11.g1 MSMg01no053_g11.g1 CHROMAT_FILE:
MSMg01no053_g11.g1 PHD_FILE: MSMg01no053_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:18 2005
         (245 letters)



>mm_chr11_99547492_99548136
          Length = 645

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaggaatgtcctaatatccaaaacatggatctttgacaatacacatttagagcaaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaaggaatgtcctaatatccaaaacatggatctttgacaatacacatttagagcaaacc 386

                                                                       
Query: 61  tgagattctctaatacatttgcctgctctttctttcagtagctgcacattagaaacaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgagattctctaatacatttgcctgctctttctttcagtagctgcacattagaaacaaca 326

                                                                       
Query: 121 ctctagcatcgtgtttaagagaactgacataaataaatcatgtgcttagggtcatttggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctagcatcgtgtttaagagaactgacataaataaatcatgtgcttagggtcatttggc 266

                                                                       
Query: 181 aagtggggacaatgatccttagttatctgaagttaggatcccaaggaagtgcaagtcacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtggggacaatgatccttagttatctgaagttaggatcccaaggaagtgcaagtcacc 206

                
Query: 241 cagaa 245
           |||||
Sbjct: 205 cagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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