BAC Information

Click to search

BAC

Clone NameMSMg01-054I23
Chromosome11 (Build37)
Map Location 59,205,932 - 59,206,210
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249
Downstream gene1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054I23.T7 (MSMg01no054_i23.b1)MSMg01-054I23.TJ (MSMg01no054_i23.g1)
ACCAG282464AG282465
length794811
length of high quality
(start - end)		---282 (135 - 416)
definitionCHROMAT_FILE: MSMg01no054_i23.b1 PHD_FILE: MSMg01no054_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:46 2005CHROMAT_FILE: MSMg01no054_i23.g1 PHD_FILE: MSMg01no054_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTTTTTAGAGGTGAAGGGGGGGGGCGAAGAAACNGGAANNNAGGGAA
AAAGAAGTGGGGCGCNNANNNNNANATTACATATAGANGGNGGNNNNNNG
NNTTCCAAAAAAGNNGGGGGNNGNGGNNNGNNNGNGNNGNNGNGNGNNNG
GNNNGTTTGCCCCGGTNGTGTTNGTNNTNGGNGGTGGNGGGNNNTTTNTN
NNGTGNGGGGGGGGGGGTGGTNTTGTTGTTGGGGNGTGGGGTTGGGGNGN
GTGGTGTGTTTGGNGGNTGGNNNGGGTGGGGGGNGGGGTTTTTTTTTTGT
GGGGGGGGGNNGGTGGGTNGGTTTTGGTGATGGNNNNGNGGGGNNGNNNN
GNGNTTTTTGGTGGTTTTTGGGNGNGGGGNGGGGNGNNGGGNGGGGTTTT
TTTTTTTTTGCCCCCCCCGCCGCGGGGGGGGGTGNNNGNTTGGTGGTTTT
TGTTGTTTTTTCCTCGTTTGATAATTGATTCCGGGTGGGGGTGTGTGTTC
TTTTCTTTTTGGGTTCTTGGGGTGGTGGGGTGTTTGGTGTTCGGGTGTTG
TGTGTGGTTGGGTGGTTGTTGTGGGGGTCTGGGTGGTTTCTTTTTTGGGT
TTGGGGTTGTTGTGGGGTTGTTGGTGGTTGTGTGTTGGGGTTTGGTTGGG
TGGGGGGGTGGGTTTGGGGTGGTGGTTGGTGTGTGTGGGGGGTGTGTGTT
TTTGGGTGGTTGCGTGGGGGGGTGCTGTGTGGGGTTTTTTTTTTTTTTTT
TGNGGTTTTTGTTTTGCTTGGTTTTGTGGTGTGGTGTTTGTGTT

NTTTTTTTTTTCCNTTGNCCTCTCCATTTAAATGTGGNCGGGTCTTCTTT
CCCCTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCCCCGAGGAATTCCAGGATCCCCAAGGCTACAC
AGAGAAAAAGAATATTCCAATCCACCCCTAAAGAGCATAGTTAGGGACCC
AGTGGAGACAGACTGGCAGTCACTTGTTCTCCTCCGGGTGCCGTGCACAG
CAGAGGGGAAGCTGCAGTCAAACATCAAAGAGAAACATGGGGAAAATGAA
TCACAAGTTGTAAAGGGATTGGAAAACAGAAAACTGACCTTCATGGAAAT
GGCACATCGTTGAGAGGTCTCCAACCACGTGTCATGTGACATGTCATATG
ACACCTATGATGTTTTTTTTCACCAGCCAGCATGCCTTGGCGGTCACTAA
CTTCTTCAATTGGATTTACGACTTTCTCAATAAGAGGGAACTACTTCTTT
TCTTCTTCTTCATCTTCATCTTATTCTTCTTCTTCTCCTTCTTCTTCTTC
TTCATCTTCTTCTTCATCTTCATATTCATCTTCATTCTTCTTTTTCTTCT
CCCTTTCCCTCTTCCATCTTCCTTCATTTAACTGCCTTATTCAGCACTGG
CTTGATTTTCGTACTTGATATTTTTTTTAATCTGTTATATATTTTAATAT
TTTTATGTACTAGTTTTATCCTTTATTTAGTCAGGAGAGAAATGGACAGA
GGCATACTAATATAATTATTATATATTTAGAAATATAACTATAATATATG
AACACAAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_i23.g1 MSMg01no054_i23.g1 CHROMAT_FILE:
MSMg01no054_i23.g1 PHD_FILE: MSMg01no054_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:46 2005
         (282 letters)



>mm_chr11_59205732_59206414
          Length = 683

 Score =  462 bits (239), Expect = e-135
 Identities = 269/279 (96%), Gaps = 1/279 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atccccaaggctacacagagaaaaagaa-tattccaatccacccctaaagagcatagtta 59
           |||||||||||||||||||||||||||| |||||||||||| |  |||||||||||| ||
Sbjct: 479 atccccaaggctacacagagaaaaagaattattccaatccatcaataaagagcatagcta 420

                                                                       
Query: 60  gggacccagtggagacagactggcagtcacttgttctcctccgggtgccgtgcacagcag 119
           |||||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||
Sbjct: 419 gggacccagtggagacagactggcagtcacctgatctcctcggggtgccgtgcagagcag 360

                                                                       
Query: 120 aggggaagctgcagtcaaacatcaaagagaaacatggggaaaatgaatcacaagttgtaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aggggaagctgcagtcaaacatcaaagagaaacatggggaaaatgaatcacaagttgtaa 300

                                                                       
Query: 180 agggattggaaaacagaaaactgaccttcatggaaatggcacatcgttgagaggtctcca 239
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 299 agggattggaaaacagaaaactgaccttcatggaaatggcacatcgctgagaggtctcca 240

                                                  
Query: 240 accacgtgtcatgtgacatgtcatatgacacctatgatg 278
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 accacgtgtcatgtgacatgtcatatgacacctatgatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 683
Length adjustment: 9
Effective length of query: 273
Effective length of database: 674
Effective search space:   184002
Effective search space used:   184002
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |