MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-054O07
Chromosome	11 (Build37)
Map Location	85,854,413 - 85,854,645
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3, Tbx2, Tbx4, LOC668751
Downstream gene	Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Usp32 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237898 MGI:2144475
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668794 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668794
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 8 Proteins pseudo : _no_value

name	LOC234848 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:234848
definition	note : ribosomal protein L13 pseudogene pseudo : _no_value

name	1700125H20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73634 MGI:1920884
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 3 Proteins

name	Appbp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66884 MGI:1914134
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D630032N06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:654810 MGI:3603817
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs

name	Ppm1d (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53892 MGI:1858214
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bcas3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192197 MGI:2385848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tbx2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21385 MGI:98494
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tbx4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21387 MGI:102556
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668751 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668751
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins pseudo : _no_value

name	Brip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237911 MGI:2442836
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668803 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668803
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 42 ESTs, 5 Proteins pseudo : _no_value

name	Ints2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70422 MGI:1917672
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Thrap1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:327987 MGI:3029632
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	0610013E23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76892 MGI:1924142
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rps6kb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72508 MGI:1270849
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tubd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56427 MGI:1891826
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043687 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043687
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 7 ESTs

name	Tmem49 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75909 MGI:1923159
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptrh2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217057 MGI:2444848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cltc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67300 MGI:2388633
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dhx40 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67487 MGI:1914737
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ypel2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77864 MGI:1925114
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gdpd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66569 MGI:1913819
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Usp32 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126032298 GeneID:237898 MGI:2144475
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 32 transcript_id : NM_001029934.1

name	1700125H20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94390268 GeneID:73634 MGI:1920884
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 3 Proteins product : RIKEN cDNA 1700125H20 gene, transcript variant 1 transcript_id : XM_126139.5

name	Appbp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892350 GeneID:66884 MGI:1914134
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amyloid beta precursor protein (cytoplasmic tail) binding protein 2 transcript_id : NM_025825.3

name	Ppm1d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560441 GeneID:53892 MGI:1858214
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 1D magnesium-dependent, delta isoform transcript_id : NM_016910.2

name	Bcas3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801917 GeneID:192197 MGI:2385848
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : breast carcinoma amplified sequence 3 transcript_id : NM_138681.3

name	Tbx2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:120407038 GeneID:21385 MGI:98494
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : T-box 2 transcript_id : NM_009324.2

name	Tbx4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27777678 GeneID:21387 MGI:102556
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : T-box 4 transcript_id : NM_011536.1

name	Brip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:30795234 GeneID:237911 MGI:2442836
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : BRCA1 interacting protein C-terminal helicase 1 transcript_id : NM_178309.1

name	Ints2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86476083 GeneID:70422 MGI:1917672
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : integrator complex subunit 2 transcript_id : NM_027421.2

name	Thrap1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124286861 GeneID:327987 MGI:3029632
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thyroid hormone receptor associated protein 1 transcript_id : NM_001080931.1

name	0610013E23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352272 GeneID:76892 MGI:1924142
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 0610013E23 gene transcript_id : NM_029788.3

name	Rps6kb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802571 GeneID:72508 MGI:1270849
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein S6 kinase, polypeptide 1 transcript_id : NM_028259.2

name	Tubd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83921619 GeneID:56427 MGI:1891826
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tubulin, delta 1 transcript_id : NM_019756.2

name	LOC100043687 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149262018 GeneID:100043687
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 7 ESTs product : hypothetical protein LOC100043687 transcript_id : XM_001481052.1

name	Tmem49 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367994 GeneID:75909 MGI:1923159
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 49 transcript_id : NM_029478.3

name	Ptrh2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129837 GeneID:217057 MGI:2444848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peptidyl-tRNA hydrolase 2 transcript_id : NM_175004.2

name	Cltc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51491844 GeneID:67300 MGI:2388633
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : clathrin, heavy polypeptide (Hc) transcript_id : NM_001003908.1

name	Dhx40 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144926008 GeneID:67487 MGI:1914737
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAH (Asp-Glu-Ala-His) box polypeptide 40 transcript_id : NM_026191.2

name	Ypel2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115496192 GeneID:77864 MGI:1925114
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : yippee-like 2 (Drosophila) transcript_id : NM_001005341.3

name	Gdpd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956139 GeneID:66569 MGI:1913819
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycerophosphodiester phosphodiesterase domain containing 1 transcript_id : NM_025638.1

name	Usp32 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126032299 GeneID:237898 MGI:2144475
definition	GO_function : GO:0008233 - peptidase activity [Evidence IEA] codon_start : 1 product : ubiquitin specific protease 32 protein_id : NP_001025105.1

name	1700125H20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38091535 GeneID:73634 MGI:1920884
definition	codon_start : 1 product : hypothetical protein LOC73634 isoform 1 protein_id : XP_126139.2

name	Appbp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313248 CCDS:CCDS25193.1 GeneID:66884 MGI:1914134
definition	GO_component : GO:0030659 - cytoplasmic vesicle membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008017 - microtubule binding [Evidence ISS] GO_process : GO:0046907 - intracellular transport [Evidence ISS]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : amyloid beta precursor protein (cytoplasmic tail) binding protein 2 protein_id : NP_080101.1

name	Ppm1d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560442 CCDS:CCDS25194.1 GeneID:53892 MGI:1858214
definition	GO_component : GO:0008287 - protein serine/threonine phosphatase complex [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0004724 - magnesium-dependent protein serine/threonine phosphatase activity [Evidence ISS]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IMP]; GO:0006470 - protein amino acid dephosphorylation [Evidence IEA]; GO:0009617 - response to bacterium [Evidence IMP] codon_start : 1 exception : mismatches in translation product : protein phosphatase 1D magnesium-dependent, delta isoform protein_id : NP_058606.2

name	Bcas3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37620155 CCDS:CCDS25195.1 GeneID:192197 MGI:2385848
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 exception : mismatches in translation product : breast carcinoma amplified sequence 3-like protein_id : NP_619622.2

name	Tbx2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:120407039 GeneID:21385 MGI:98494
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0007569 - cell aging [Evidence IDA]; GO:0007275 - development [Evidence IEA]; GO:0030879 - mammary gland development [Evidence IGI]; GO:0016481 - negative regulation of transcription [Evidence IDA]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : T-box 2 protein_id : NP_033350.2

name	Tbx4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27777679 CCDS:CCDS25196.1 GeneID:21387 MGI:102556
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0030326 - embryonic limb morphogenesis [Evidence IMP]; GO:0030324 - lung development [Evidence IMP]; GO:0002009 - morphogenesis of an epithelium [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : T-box 4 protein_id : NP_035666.1

name	Brip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30795235 CCDS:CCDS25197.1 GeneID:237911 MGI:2442836
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolism [Evidence IEA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence ISS]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 product : BRCA1 interacting protein C-terminal helicase 1 protein_id : NP_840094.1

name	Ints2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:86476084 CCDS:CCDS25198.1 GeneID:70422 MGI:1917672
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] codon_start : 1 product : integrator complex subunit 2 protein_id : NP_081697.2

name	Thrap1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124286862 GeneID:327987 MGI:3029632
definition	GO_component : GO:0000119 - mediator complex [Evidence ISS] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0003713 - transcription coactivator activity [Evidence ISS] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence ISS] codon_start : 1 note : thyroid hormone receptor associated protein, 240 kDa subunit; mediator of RNA polymerase II transcription, subunit 13 product : mediator of RNA polymerase II transcription, subunit 13 homolog protein_id : NP_001074400.1

name	0610013E23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313294 CCDS:CCDS25200.1 GeneID:76892 MGI:1924142
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : RIKEN cDNA 0610013E23 protein_id : NP_084064.1

name	Rps6kb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789225 CCDS:CCDS25201.1 GeneID:72508 MGI:1270849
definition	GO_component : GO:0005830 - cytosolic ribosome (sensu Eukaryota) [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007281 - germ cell development [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007046 - ribosome biogenesis [Evidence IEA] codon_start : 1 note : ribosomal protein S6 kinase, 70kD, polypeptide 1 product : ribosomal protein S6 kinase, polypeptide 1 protein_id : NP_082535.1

name	Tubd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790053 CCDS:CCDS25202.1 GeneID:56427 MGI:1891826
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005874 - microtubule [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007018 - microtubule-based movement [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA] codon_start : 1 note : delta-tubulin product : tubulin, delta 1 protein_id : NP_062730.1

name	LOC100043687 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149262019 GeneID:100043687
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481102.1

name	Tmem49 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27753991 CCDS:CCDS25203.1 GeneID:75909 MGI:1923159
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 note : vacuole membrane protein 1; NF-E2 induceble protein-2 product : transmembrane protein 49 protein_id : NP_083754.2

name	Ptrh2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33239415 GeneID:217057 MGI:2444848
definition	GO_component : GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA] codon_start : 1 product : Bcl-2 inhibitor of transcription protein_id : NP_778169.1

name	Cltc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51491845 CCDS:CCDS25204.1 GeneID:67300 MGI:2388633
definition	GO_component : GO:0030132 - clathrin coat of coated pit [Evidence IEA]; GO:0030125 - clathrin vesicle coat [Evidence IEA]; GO:0005905 - coated pit [Evidence IEA]; GO:0030117 - membrane coat [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : clathrin, heavy polypeptide (Hc) protein_id : NP_001003908.1

name	Dhx40 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:144926009 GeneID:67487 MGI:1914737
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA] codon_start : 1 product : DEAH (Asp-Glu-Ala-His) box polypeptide 40 protein_id : NP_080467.3

name	Ypel2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:52693929 CCDS:CCDS25205.1 GeneID:77864 MGI:1925114
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 note : ortholog of human yippee-like 2 (Drosophila) YPEL2 product : yippee-like 2 protein_id : NP_001005341.1

name	Gdpd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956140 CCDS:CCDS25206.1 GeneID:66569 MGI:1913819
definition	codon_start : 1 product : glycerophosphodiester phosphodiesterase domain containing 1 protein_id : NP_079914.1

name	LOC668794 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149262014 GeneID:668794
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 8 Proteins product : similar to Ribosomal protein L18 pseudo : _no_value transcript_id : XR_034954.1

name	D630032N06Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149262015 GeneID:654810 MGI:3603817
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs product : RIKEN cDNA D630032N06 gene transcript_id : XR_035464.1

name	LOC668751 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149262016 GeneID:668751
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins product : similar to ribosomal protein L21 pseudo : _no_value transcript_id : XR_034957.1

name	LOC668803 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149262017 GeneID:668803
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 42 ESTs, 5 Proteins product : similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G pseudo : _no_value transcript_id : XR_034958.1

clone name	MSMg01-544P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374A16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-547N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-191N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272P03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-272C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167O18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-381A11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-377O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324A01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031A01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091J04
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-054O07.T7 (MSMg01no054_o07.b1)	MSMg01-054O07.TJ (MSMg01no054_o07.g1)
ACC	AG282708	AG282709
length	766	774
length of high quality (start - end)	---	233 (176 - 408)
definition	CHROMAT_FILE: MSMg01no054_o07.b1 PHD_FILE: MSMg01no054_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:11 2005	CHROMAT_FILE: MSMg01no054_o07.g1 PHD_FILE: MSMg01no054_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:11 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	NGGGGGGGGNNNNNNGGGGTGGGGTTTGGGGGGGGTGGAGGGTAAAANCT ATATATAATAGGGGGGNAAANNNGATAAATCATATAAGATGGGGGNNNNN NTNGTACTAAAAAAAGTNNGNGNGGGNNNGNNNNTNTTTGTNGNNNGNNG NNTTTTTTGCTGTTTGGTTTGTTNTTTTTGGNGTGNTTTTTGTGTTTGTG TGTTGTTTGGTTTTTTGTGGGGTGGGGGTGTGTTGTGTTGGGTGGGGTTT TGTGTTNTTTNTTTGTTTTGTGGTNTTGGTNTTTTTTTTGGTTGGTTGTT GGGTTTTTGGTTTGTGGGGGTTTTTGGGTGGGTGGGTGTGGGGGGGGGTT TTTTTTTTTTGNNNNNGGGGGGGNNNGNNGNGNNGNNGATTTTTTTTGNC CTCTGTTGGGAGGGTGGGGGGGTGNGGGGATGGTGTGTGTTGTGTGTGGT TGTTAATAAAAAATTAAGTATGTATGGGGGAGGTAGTTTTTTGGTGTGTG AGAAATATGTGAATTATTTGTGTATGTAATAATAGGGGAGGGTTTGGTTA AAGGAGGGTTGGATGTTTATTATGAAAGGTGTAGGTGGGTTTTGTGAAAG GAAGTTAGGATTGATTGTGTTGAGTAAGGGAGGAAGAGAAGGTTTTAGTT GTGGTTTTGTAAATATATGGAAAGTAGGGTAATGTAGGGTGGGTTTATTT TTTAATTGGTGTAAAAGGGAGTGTTTTTAAGTTTGGAAGGTAGAATAGGT TGTGTGGTGAAGGGGG	TTTTTTTTTTTTTTTNNNCNNNGGTGTGTCTAGTCNCCTTTGTTCNNNCC CCCGATGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXCATTCTTCTATATTCTTATGAATT TCTTAGAATAGCCTGCTTTTCCCCTTAGCTATTTTGGTGGGTGGAAAGTG ATGTATTATGACTTTAATTTGCATTTTCCTGATGAAAGTGCCATTCGTGC CTTTGATTCCCATTTTGTGTTCAAAGACAAACCATAACAATTCCTCAATG TGTTTATATTAAGTAGTGACTAAGTACAATTTGAGTTTTTGTTTTATTTT AGATTAAAAGCTGTTTTGCCTTTATTTATTTTATAGATATGAATGCTCTG TCTGATTGTATGTCCATGCACCCTGCGCATGGCTGATGTCTGCAGAAGTC AGGAGAGGGCATTGGATCTCCTGGAACCCGAGTTCCAGTAGCCTTTCCTT TCCTTAGTGGTCTCAGAGTTCATAGGTAGTGATGCTGTATTAAGTAACTC TGACAAGAAACAGTATTCAGACTTTTTTATGTGATATGATGAAAGCTACT AACGGTTATAGGAAAGTTATCCTGTTAGAAACAAAATTTGAAGATTAGGG AGATCACCAAGCAATAAATTGCCCTTTTTATAATTGAAAACTAAAGTTTT TTTTAATGGGTAATGATTGTATAATCAGAAGTCCTTATGGAGTTTATTAC CCCACATTTTTTCCTCCTATAAAN
quality values	Open. Hide. 0 3 7 7 9 9 7 7 3 0 0 0 0 0 0 3 7 7 6 6 6 10 10 9 14 11 13 8 9 10 10 9 8 8 8 8 8 8 8 8 6 6 6 6 8 8 3 0 3 3 6 8 8 11 12 9 9 6 6 6 6 15 8 6 6 3 0 3 8 3 0 0 0 3 10 8 13 3 9 9 6 6 6 6 6 6 8 8 6 6 6 8 11 17 3 0 0 0 0 0 0 3 0 3 7 7 7 7 12 12 32 19 9 7 7 6 3 0 0 3 0 3 0 3 13 3 0 0 0 3 0 0 0 0 3 0 3 25 21 15 3 0 3 0 0 0 3 0 0 3 0 0 3 7 8 7 8 8 9 9 9 9 8 10 6 9 6 6 10 8 6 6 3 0 3 27 13 10 10 9 3 0 3 12 3 0 3 18 27 22 22 10 9 9 9 8 8 6 8 13 8 9 9 11 11 11 14 16 23 17 17 14 22 23 11 9 9 8 6 7 7 7 8 9 9 12 9 9 9 10 8 8 8 7 7 7 7 7 13 15 15 10 15 8 8 8 9 15 16 9 9 9 9 9 9 3 0 3 9 3 0 3 10 10 8 6 6 9 9 6 6 6 7 3 0 3 15 16 8 3 0 3 8 9 19 13 16 21 13 18 9 9 7 8 8 8 8 8 8 8 8 13 10 9 9 13 13 18 15 10 10 10 10 13 15 18 23 27 31 28 22 25 19 28 18 14 12 15 8 8 6 6 6 6 6 6 8 8 6 6 7 7 9 19 28 21 11 9 9 9 13 16 9 10 10 12 12 10 8 6 3 0 0 0 0 0 3 18 23 19 9 9 3 0 0 0 3 0 0 3 0 3 0 0 3 0 0 3 18 19 25 23 36 32 19 13 10 3 0 3 9 9 9 15 11 9 11 9 11 12 12 12 10 6 6 6 10 11 9 9 9 7 9 3 0 3 10 9 9 10 8 8 8 6 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 7 8 8 6 8 8 13 19 13 10 10 10 13 17 8 8 8 8 8 8 11 11 11 11 11 11 11 12 11 11 11 11 11 12 18 11 11 10 10 8 8 8 8 8 10 15 24 14 14 12 12 8 8 8 6 6 8 8 8 12 15 12 15 10 11 9 10 8 8 10 13 13 12 13 8 8 6 8 8 8 8 14 9 9 9 9 11 11 10 10 16 11 11 10 11 11 11 11 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 6 7 8 8 8 8 8 8 6 10 8 8 8 8 8 8 10 13 19 9 9 8 8 8 8 8 6 6 10 12 10 10 8 8 8 9 8 8 8 9 8 8 8 8 8 8 10 8 8 8 8 6 6 9 9 9 9 9 8 8 8 8 8 8 10 10 10 10 10 11 11 11 11 11 8 8 8 8 8 8 8 8 10 10 11 11 8 8 8 8 8 8 14 9 9 9 9 9 11 12 8 8 8 8 8 11 7 8 8 6 10 9 9 8 8 8 12 15 11 9 9 9 10 9 9 10 10 10 10 10 17 19 12 12 9 8 8 15 15 7 7 6 10 8 8 8 9 9 12 11 12 12 12 10 10 10 11 9 10 8 8 8 6 6 8 8 8 8 10 8 7 6 8 8 8 8 8 8 8 8 11 17 12 11 11	Open. Hide. 9 9 9 9 9 9 9 9 9 9 9 9 7 7 3 0 0 0 3 0 0 0 3 10 14 12 17 12 11 11 9 9 8 8 3 0 3 9 10 10 11 8 8 9 3 0 0 0 3 21 15 8 6 7 8 6 8 9 8 8 8 8 8 8 8 8 8 11 18 21 24 21 18 18 18 16 14 14 13 12 10 18 18 12 10 10 8 8 8 10 13 16 24 26 34 23 23 22 23 25 32 32 28 28 36 34 23 16 11 9 10 10 8 6 6 6 6 10 10 19 12 12 19 19 28 29 33 33 33 33 43 40 40 39 39 39 47 43 47 48 48 43 43 43 48 48 48 48 48 48 48 47 32 32 20 12 13 21 24 28 24 25 24 24 12 14 12 22 10 12 9 9 8 8 8 13 15 29 35 35 39 39 48 39 33 28 28 21 29 27 30 17 24 25 32 33 40 29 32 24 29 24 25 12 12 8 8 8 19 22 30 30 30 36 36 36 28 32 30 37 28 28 29 36 40 37 32 30 30 28 40 40 37 37 39 39 41 43 42 42 35 30 30 28 32 16 16 14 14 14 18 27 40 43 47 37 32 21 13 12 12 12 19 27 36 30 24 17 17 21 24 25 32 32 29 32 30 21 21 15 14 14 21 23 30 33 29 30 30 30 33 39 39 39 34 28 20 20 13 21 18 20 23 32 32 41 32 32 18 19 13 18 24 33 31 35 31 34 28 28 23 34 23 23 14 14 14 15 23 28 47 47 59 39 37 30 30 28 20 20 11 11 11 18 20 30 30 37 28 30 17 17 17 30 30 36 36 28 28 23 31 28 36 36 36 24 24 14 14 14 17 30 32 35 35 32 37 39 35 31 31 31 33 33 32 32 28 33 28 28 28 32 32 36 36 43 39 39 33 32 30 30 19 24 15 16 11 12 12 15 12 12 11 12 12 22 25 13 13 13 16 19 17 15 10 10 12 15 15 12 18 11 11 12 25 23 19 12 12 15 20 21 14 13 15 13 18 18 28 28 28 24 24 15 18 11 15 12 12 12 12 15 24 25 28 21 24 19 15 14 21 18 14 10 15 13 13 10 10 11 16 16 11 11 10 12 15 18 20 20 23 23 28 15 15 8 8 8 12 21 21 16 10 10 15 10 10 9 9 10 11 13 11 11 13 15 17 17 15 15 15 8 8 6 6 6 8 10 12 13 13 8 8 6 6 8 8 8 8 8 6 6 8 6 6 8 8 8 8 9 8 11 8 9 10 10 12 10 10 10 15 13 15 10 10 10 10 10 10 13 15 15 11 12 12 15 23 12 12 12 16 12 12 7 7 8 8 9 16 16 20 12 10 10 9 9 9 10 11 11 16 11 10 10 9 10 9 10 8 8 9 9 11 11 11 11 11 12 12 10 10 10 10 15 17 16 13 14 14 15 13 10 10 10 10 10 10 10 9 9 9 9 10 12 10 10 8 8 8 8 8 6 6 8 8 8 6 7 10 10 8 8 8 8 7 9 9 13 10 8 8 8 8 8 10 13 10 10 11 8 8 8 8 8 10 10 10 8 7 8 6 6 6 6 8 9 10 10 13 11 14 17 15 18 17 10 10 8 8 8 8 8 13 11 11 11 11 11 11 10 10 10 10 10 11 10 9 9 9 9 9 9 9 8 8 10 8 8 6 6 6 8 8 10 8 8 8 10 8 8 8 10 8 8 8 8 13 15 34 24 23 15 14 10 9 8 8 6 6 8 8 10 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no054_o07.g1 MSMg01no054_o07.g1 CHROMAT_FILE:
MSMg01no054_o07.g1 PHD_FILE: MSMg01no054_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:11 2005
         (233 letters)



>mm_chr11_85854213_85854845
          Length = 633

 Score =  443 bits (229), Expect = e-129
 Identities = 232/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagctattttggtgggtggaaagtgatgtattatgactttaatttgcattttcctgatga 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tagctattttggtgggtggaaagtgatgtatcatgactttaatttgcattttcctgatga 260

                                                                       
Query: 61  aagtgccattcgtgcctttgattcccattttgtgttcaaagacaaaccataacaattcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtgccattcgtgcctttgattcccattttgtgttcaaagacaaaccataacaattcct 320

                                                                       
Query: 121 caatgtgtttatattaagtagtgactaagtacaatttgagtttttgttttattttagatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatgtgtttatattaagtagtgactaagtacaatttgagtttttgttttattttagatt 380

                                                                
Query: 181 aaaagctgttttgcctttatttattttatagatatgaatgctctgtctgattg 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaagctgttttgcctttatttattttatagatatgaatgctctgtctgattg 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information