BAC Information

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BAC

Clone NameMSMg01-055A17
Chromosome11 (Build37)
Map Location 63,100,452 - 63,100,724
singlet/doubletsinglet
Overlap genenone
Upstream geneTtc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423
Downstream geneLOC100042799, LOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik, EG544785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055A17.T7 (MSMg01no055_a17.b1)MSMg01-055A17.TJ (MSMg01no055_a17.g1)
ACCAG282819AG282820
length714906
length of high quality
(start - end)
271 (42 - 312)168 (77 - 244)
definitionCHROMAT_FILE: MSMg01no055_a17.b1 PHD_FILE: MSMg01no055_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:22 2005CHROMAT_FILE: MSMg01no055_a17.g1 PHD_FILE: MSMg01no055_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTATTTCCTTTACCCACTTCCCACTCCCCACACCCACCTCTACCCTCA
CCCCTACCCCACCACCACTCACCCCACCCTCACGCCCACCCCCACCCCAC
CACCACTATGCCTGGCAAATGGATGGCTTTGATTACAGAGGATGGTTTTG
TGAAGTCAGGGTCTTGCATGTGCTAGAGAGAAGTCTGGATACACAGAGGC
CTGGGGGAAGAGAATGGAATCTAGAAATGGACAGGGCCTGAGACAGGGAA
AAAATACCAAATGTTTATTGGAGAAGCTGCCTCAGTTTCCTGACAGTTTA
AAATGTTTGTAGTACCCCGCCCCGCAGCATACAGAAGAAACTACAGACCA
GAGAAAGCACTGGATAATGACACTTGGATGACTAAAAGTCTTCACCTATG
GGAAAGATGGGGAAAGCCTAGGGAGAAAGAAGCAGCACACAAACTTACGA
GTACCCCAGACACTGGGCCAGACAGGTATGGAGAGATGAGGGTACCCTGT
ATAGCCAAGAAGATGCGAGTCATAGGCCCCTATGTCGAGTGCCACTACAT
TGTTTTAGTGATAGATGCCACATGCACTCAATCATGACCTCTGTGCATTG
GTCCCACCTAGTCCAGAGAATTCACCCCTAGAAAGAATACTCCCTTAACT
AGTTCCCATGCCCG
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGTAGTTGTTTTCTATTCATG
TGAAGAATGAGATGGAGATTTTGATTGGGGTTACATTGAGTCTGTGAATA
GCTTTTGGCAAAATGGCCATGTTTTTCATAATATTAATTCTACTAGTCTT
CCCATTTTCTAGTCTCTCTCCCTCCCTCCCTCCTTCCCTCCCTCCTTCTT
CCTTTTTTCCTTTCCCTCCTTTTTTCCTTTCCCTCTCTTTTCCCCCCCCC
TTCTTCCTCCCTCCCTTTTTTCTTTTTTTCGTTCCCCCTTTCCCCCTCCT
TCCCTTTCTTTCTTTTTCTCTCTCCCTTCCTCTCTTTTTTTTTTCGTCCC
TCCTACCTTTTTTTCTCTCTTCTTCGCACTTATGTCCTTCCTGCTTCCTC
CTTTTCCTTTCCCTCTTTTTTTCATTTTCTTTCTTCCCTTTACCTCTTCT
ATCTCCCCTTCTTCCCCCCTCTTTTCTTCCCCTTTCACTCTTCCCTCCCT
TTTTCCGCCCTATTTCCTCCTATTTTCTTCCACCTTCCTCTTTCTTCCTC
GCTTTTTATTCCTCTCCGCCCCTCTTCCTCCCGCCCCTATACTTCCCGCG
CTTTATCTCCCCCCTCCTTTATTTCCGGCACGCACACTCCTCGCCCCCCT
ATTTTCCTCTTTTTATCTTCCCTCCCCTATTTCCCTTCGTTATTCCCCTC
CCTCTCCTTTTCCTCCCTGCCTATCCTTCTCTTTGCCTTCCCTTTCTTTT
CTTCCTCCTTCTTTTTCCTCTCCTCCTTTTTTCCTTTCTCCTTCTCTTAC
CGTTCTTTCCTTCTTCCCCTTTCCGTTCCTTTCCCTTTTCACTTTTTCCC
TTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_a17.b1 MSMg01no055_a17.b1 CHROMAT_FILE:
MSMg01no055_a17.b1 PHD_FILE: MSMg01no055_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:22 2005
         (271 letters)



>mm_chr11_63100145_63100815
          Length = 671

 Score =  480 bits (248), Expect = e-140
 Identities = 265/274 (96%), Gaps = 8/274 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactat-ttcctttacccacttcccactccccacacccacctctaccctcacccc 63
           ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 580 gaattcactatgtt-ctttacccactccccactccccacacccacctctaccctcacccc 522

                                                                       
Query: 64  taccccaccaccactcaccccaccct------cacgcccacccccaccccaccaccacta 117
           ||||||||||||||||||||||||||      ||||||||||||||||||||||||||||
Sbjct: 521 taccccaccaccactcaccccaccctcacgcccacgcccacccccaccccaccaccacta 462

                                                                       
Query: 118 tgcctggcaaatggatggctttgattacagaggatggttttgtgaagtcagggtcttgca 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tgcctggcaaatggatggctttgattacagaggatggttttgtgaagtcagggtcttgca 402

                                                                       
Query: 178 tgtgctagagagaagtctggatacacagaggcctgggggaagagaatggaatctagaaat 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgtgctagagagaagtctggatacacagaggcctgggggaagagaatggaatctagaaat 342

                                             
Query: 238 ggacagggcctgagacagggaaaaaataccaaat 271
           ||||||||||||||||||||||||||||||||||
Sbjct: 341 ggacagggcctgagacagggaaaaaataccaaat 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)