BAC Information

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BAC

Clone NameMSMg01-055I17
Chromosome11 (Build37)
Map Location 84,120,641 - 84,120,931
singlet/doubletsinglet
Overlap geneAcaca
Upstream geneAp2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997
Downstream geneLOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055I17.T7 (MSMg01no055_i17.b1)MSMg01-055I17.TJ (MSMg01no055_i17.g1)
ACCAG283187AG283188
length707803
length of high quality
(start - end)
291 (67 - 357)35 (451 - 485)
definitionCHROMAT_FILE: MSMg01no055_i17.b1 PHD_FILE: MSMg01no055_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:58 2005CHROMAT_FILE: MSMg01no055_i17.g1 PHD_FILE: MSMg01no055_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCCATATTCTTCACATTCCGAGCAAGGGATAAGGTAAGGCTGTTTCA
CTCCATTGCTTCCTTTTCTCTCCCTTTCTCCTTCCTCCTCCTCCCTCTTC
GAAGTCCTCCCCCAACCCTACATCCTTCCCTCCTCCTCTTTCTGTGCTGT
GCAGTTCCTTGCTGACACTCTCCTTTCTCTAAAGCATGCTTCCTTCAGAA
AGGGCTTGCTTGAGAAAGTGATCAGTGCGTTGACCCAGAGGAGGCAATAA
CTTGTAAAACGGCCCTTTCCTTCAGAACACTTTTGATGTGCTATTAAAGA
CTGCTTTATTTAGTCGGACCTCACTCTTTGTCATCTACAGCCAGTTGATT
TATACTCAGCTCTTCTTTGTGTCCATTTGGTTTTTAAATTTTCATATCAT
GTTGATTTCTCCTTCCTACCAGCTTATATTTTAGGTGTCTCTTCCATTGA
CTTAATTGATGGACTTTCTAGTATAACAATTTATATTCAGCAAACATGTA
GAAATGGACTAATAATACTTTTTTTTTACATAAACAATGATTTAACTATT
AGGATGGAATGCCCAAAGTCTAATACCATCTAAAAATTATATGGTAGCTA
TTTACTATTATGTCCTTTGGCGCTTTGACATATATGGTAAGATACGAGTT
TTTGCTC
AGCGCGCTGTTTGAGGGGCGGGCCCTGTCCCCCCANCCCCCCCNCCGCCC
NNNNCACCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTACAANGAGGGACGGGNNNNGGANNNGAG
NANNCAGAANNCNNCACNCNCCANCGGGNNNNGCCGGAGGCCNNCCCAGC
AAAGGAAGGCNCCACCGGCGCCCGGAGGNNNCACACAGCACCCCCNNAAN
CANAAGCGCGGACACCNANCACACGGGGAGGNCAGAGGAGCAAGACCNGG
CAGGAGNCCGNNCNCTCCNNCCACCAGGNGGGNCCCAGGGAAAACACNCG
GGCCGCNAGGCCCAGCAGNAAACANCCNCTTTTTTTTTTTCGCCCAACAA
ACCCAGCTTCGGCACACNAGAGAGAAGGGCGCCCCCCACCTGNAAAGAAG
TGAAAATTGAGTCCTGTTTTCTAAGTCTGTTTATGGGAAATTACCCATGT
AGTAGCCACTGTGATAATTGATTTGATTAACTCTGTGCGTATGAGGGTAG
GGGGCCTTAAAAACACCAGGAATTACCGAGTTCATTCCTGTCCAGCCACT
TGACATGTTGACCGGAGTTTACCCCTAAGGGCCACCTTCTGATATGGACC
GCATGCTCCGCATAACATATGTAGTGTTACCAGAAAAGCCCTTCGGAACT
ACCTGATTGCTGGGCACATCTTTTTTTGTTTGTATTGAACAACTTTTGCC
CTGGTTCCTCTCGGCCAGTATCAATACCTCCACTTCTCCTTATACCATTT
GGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_i17.b1 MSMg01no055_i17.b1 CHROMAT_FILE:
MSMg01no055_i17.b1 PHD_FILE: MSMg01no055_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:58 2005
         (291 letters)



>mm_chr11_84120441_84121131
          Length = 691

 Score =  509 bits (263), Expect = e-148
 Identities = 284/291 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattccgagcaagggataaggtaaggctgtttcactccattgcttccttttctctccctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattccgagcaagggataaggtaaggctgtttcactccattgcttccttttctctccctt 260

                                                                       
Query: 61  tctccttcctcctcctccctcttcgaagtcctcccccaaccctacatccttccctcctcc 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tctccttcctcctcctccctcttcgcagtcctcccccaaccctacatccttccctcctcc 320

                                                                       
Query: 121 tctttctgtgctgtgcagttccttgctgacactctcctttctctaaagcatgcttccttc 180
           |||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||
Sbjct: 321 tctttctgtgctgtgcagttccttgctgacactcccctttctctaaggcacgcttccttc 380

                                                                       
Query: 181 agaaagggcttgcttgagaaagtgatcagtgcgttgacccagaggaggcaataacttgta 240
           |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 381 agaaagggcttgcttgagaaagcgatcaatgcgttgacccagaggaggcaataacttgta 440

                                                              
Query: 241 aaacggccctttccttcagaacacttttgatgtgctattaaagactgcttt 291
           |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacagccctttccttcagaacacttttgatgtgctattaaagactgcttt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)