BAC Information

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BAC

Clone NameMSMg01-056C07
Chromosome11 (Build37)
Map Location 92,541,516 - 92,541,751
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC382545, LOC100039286, Car10, LOC629636
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056C07.T7 (MSMg01no056_c07.b1)MSMg01-056C07.TJ (MSMg01no056_c07.g1)
ACCAG283623AG283624
length724734
length of high quality
(start - end)
224 (73 - 296)236 (77 - 312)
definitionCHROMAT_FILE: MSMg01no056_c07.b1 PHD_FILE: MSMg01no056_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:43 2005CHROMAT_FILE: MSMg01no056_c07.g1 PHD_FILE: MSMg01no056_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAAGGATCCGCGGAA
TTCTCTGTTTACCTCTAAACTACATTTTTAAGATTATGTTATTTGGTTTA
TTAATGTATAATTTCTTGCACCTCTCTATATATTTTGGATATAAGTCCTC
TGTTGAATGTAAGGTTGGTGAAGTTCTTTTCCCACTCTGTAGGCTGCTAT
TTTGTCCTACCTGATGGATGTCCTTAGCCTTGCAAAGGTTTTTCAGTTTT
ATGAGGTTTCATTTATTAACTGTTGATCTTAGTGTCCAGTTATTAGCGTT
CTGTTCATGAGTTTGTCTCATTATGCTAATGAGTTCAAGGTAGTTACTCA
AGTTCTCTTCTATTAGATTTATTGTATGCAGTTTTACATCAAATTGGTTG
AGCCACTTGGACTTGAGTTTGGTGCATTCCGACAGATGTGTTTCTACTAG
TATTCTTCTACCTACAATTCCCGTTAGACTTAGCAAGGATTGTTGAAGAT
TTTTTTCCTTTTTTTATAATATACTTTTGACTTCTTTGATAAATATCAAG
TGTCCCCACTGTCTGAGACGTCTATTTTTGTCTGACCGAATCTATTCTAT
TTGCAAATCCATATCTGTTCTTTATGTGCACAACTTTGCCTCTTCTTTTT
ACTTATTGTGAGTTGACATTATCTTGTGAATCCACCGGCTTATTTTTTTC
CTCTCCCTTTTTTATTTTTATTTT
ATGAAATGGGAAGGCCTGGCGGCCGCCTGTTTCTTCAAAAGAAGGAGACA
CTATAGAAGTATCACCAAAATTCCATGGCTGCCTCATACACATCAGGAGT
TCACTATGTACTCAATTATTTCGAAGCTAAATATACAGTTGTATTCTCTT
AAATAATTTCCCTTTTAAAGTGTAGAAAGTTTTATTCTGGCAATAATCTT
CACAGTTCATAAAGTCGCTGTCAGAAAATATATCCAACGAGAAGTGACTA
TGAAAACGCTACTAAACTTATAAAACGTGAATAATTCTATGACTGCCACT
TCTTCATTTCTTAGCAATTACTAGATCCTTCTAGTGAAGACCATATGCAG
AAAGCAAAGGTGAGGATGAAGTAAGCTTTTCTAAAGCTCTGTGATGAACT
TTCATTGGATAATACACTTGGCTAAGGGTAAGTCAAGGAACGACTGAGCA
AATGATCACTCTAACTTATCAGTATGACCAATCTCTGATAATAAAAAACT
CGATCATTTTTCTTAATCATCTCAGTTTTTAAATTTTTGACAGATGTTCT
ACAGTGTAGATCCTGATTAATTGTATCTTCCTAATCTTTTTTTATAGCAA
AATCTTTTAACATATCCACATTTAATTCACTCCTCTCTATATTAAAGAAC
TTTTTCTGCAATCTACCTTTTCCAATATGTTATTTTCCCTTTCCCTACGT
TTCCCTCTTCCAAAACTTCCCTCTATCCCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_c07.g1 MSMg01no056_c07.g1 CHROMAT_FILE:
MSMg01no056_c07.g1 PHD_FILE: MSMg01no056_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:43 2005
         (236 letters)



>mm_chr11_92541316_92541951
          Length = 636

 Score =  404 bits (209), Expect = e-117
 Identities = 230/237 (97%), Gaps = 2/237 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctgcctcatacacatcaggagttcactatgtactcaattatttcgaagctaaatatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggctgcctcatacacatcaggagttcactatgtactcaattatttcgaagctaaatatac 260

                                                                       
Query: 61  agttgtattctcttaaataatttcccttttaaagtgtagaaagttttattctggcaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttgtattctcttaaataatttcccttttaaagtgtagaaagttttattctggcaataa 320

                                                                       
Query: 121 tcttcacagttcataaagtcgctgtcagaaaatatatccaacgagaagtgactatgaaaa 180
           ||||||||||| | |||||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct: 321 tcttcacagtttagaaagtcgctgtcagaaaatatatccatcgagaactgaatatgaaaa 380

                                                                    
Query: 181 cgctactaaacttataaaacgtgaataattctatgactgccact-tcttcatttctt 236
           |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 381 cgctactaaacttataaaacgtgaataattctatgactgcca-tgtcttcatttctt 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)