BAC Information

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BAC

Clone NameMSMg01-056L01
Chromosome11 (Build37)
Map Location 113,327,525 - 113,327,864
singlet/doubletsinglet
Overlap geneSlc39a11
Upstream geneEG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9, 2610035D17Rik
Downstream geneSstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739, LOC634710, 4932435O22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056L01.T7 (MSMg01no056_l01.b1)MSMg01-056L01.TJ (MSMg01no056_l01.g1)
ACCAG284039AG284040
length712715
length of high quality
(start - end)
478 (74 - 551)52 (125 - 176)
definitionCHROMAT_FILE: MSMg01no056_l01.b1 PHD_FILE: MSMg01no056_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:25 2005CHROMAT_FILE: MSMg01no056_l01.g1 PHD_FILE: MSMg01no056_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACAAGGTTCCCAGACAGTAAAGAATGGGCTCCTCGTTTTCC
TGTGGGGGAGAAGCACTCTGCGGGGAGTTGGGTTCTTCATATTATAACCC
AGCAGAGACACGTGTCTGCATTTCACCTAGGTCTAAAACTTTGTGGGTGG
CTAAATTCAAACGGGGGCTGGAAAGATGGCTCAGTGGGTAAGAGTAAACG
CATTACTCTTGAAGAGGACCTGAGTTTGAGTCTCAGCACCCACTCACAAA
TACCTGTATTTCCAGCTCCCTGGGTATCTGATGCCTCTGGCCTCTGTGGA
CGCAAAAATGTTCAAACATACACACAAACACACACACACACATACACACA
CACACACAGGGGGGGGGAGAGGTGGACAGTTATTGTTTGTTGCTCTTAGC
CAAGTTTATAGTGAGGATCATGAGCAGAAAAGCAGAGGAGAAGTTTGTGA
AAGTGTGAAGTCTAACTAGAACAGGAGTAAGTTGTGGTCAAGAGGGGCAT
AGTTTGCATAGGGATTGGTTAGGCTGAAGAGACGCCAAACACTTTACACT
GAGACCACTATATACTGGCCAGACCCTGCTCATAGTACACTTCCAAAGTA
CCAATCCCCAAACCCCTTTGAAGGAGTTTTCTTTGTAAATGGTGAGCCCC
TGGGGTTTCCTG
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCAGGAATTCCAGTGACGTTCTTCAACACTGGGGGGGGG
GGGGAGTGTGAATCCTACCCTTCATGGAAAGGCACAAAAACCACCAAAGA
ATCGTCGCCATGCTGAGCAGAGTGGGTGATGTCTTGGGAACCACAGTGCC
TGCTTTCAAACTAAGCAACAGAGTCACAATACCAGAAGGTAGAAGGTGTC
GTCAGGTCAGCCGCACCAGTGTGCATATGGCAGTGGGATAGAATGGCGGA
CCCACAGAGACACCCGTGCATTTTCTGAACCACAATGCCTACAGCATGTG
TTGGTAAATGATATCCTCTTCACCTCCAAAGGAGTTGAAAATTGATGCAG
GTTTTTTCTTTTTTTCTTGCCCTGAGAATAAAAAATTTCTCTGCTGCTGT
CACACCAACACCATGAACTAAATGTCGACTTTTGATAACATCCCTGATCT
GCCATAACGTTCCTCCAACTTAATAGTCCCCCATCTCAATGCTTTATTCA
TATTCTATTTGAGTACAGTTATGATGGTCAACTCTATGAAGCTTTATTCC
GTCTCATCGCTTTATTATCTTATTTAAATCACTATTCACTCTCCCCTATA
TATACCTTGGCTCCACTCTAAATTTCCTCTCCCCATCTTACTCCCTTTCT
ATCTCTTTTCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_l01.b1 MSMg01no056_l01.b1 CHROMAT_FILE:
MSMg01no056_l01.b1 PHD_FILE: MSMg01no056_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:25 2005
         (478 letters)



>mm_chr11_113327525_113328402
          Length = 878

 Score =  582 bits (301), Expect = e-170
 Identities = 335/355 (94%), Gaps = 15/355 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtaaagaatgggctcctcgttttcctgtgggggagaagcactctgcggggagttgggt 60
           ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 340 cagtaaagaatgggctcctcgttttcctgtgggggagaagcgctctgcggagagttgggt 281

                                                                       
Query: 61  tcttcatattataacccagcagagacacgtgtctgcatttcacctaggtctaaaactttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tcttcatattataacccagcagagacacgtgtctgcatttcacctaggtctaaaactttg 221

                                                                       
Query: 121 tgggtggctaaattcaaacgggggctggaaagatggctcagtgggtaagagtaaacgcat 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 220 tgggtggctaaattcaaacgggggctggatagatggctcagtgggtaagagtaaacgcat 161

                                                                       
Query: 181 tactcttgaagaggacctgagtttgagtctcagcacccactcacaaatacctgtatttcc 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 160 tactcttgaagaggacctgagtttgattctcagcacccactcacaaatacctgtatttcc 101

                                                                       
Query: 241 agctccctgggtatctgatgcctctggcctctgtggacgcaaaaatgttcaaacatacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 100 agctccctgggtatctgatgcctctggcctctgtggacgcaaaaatgttcaaacacacac 41

                                                                  
Query: 301 acaaacacacacacacacatacacacacacacacagggggggggagaggtggaca 355
           |||||||||||||||||||              ||||||||||| ||||||||||
Sbjct: 40  acaaacacacacacacaca--------------caggggggggg-gaggtggaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)