Query= MSMg01no057_a11.b1 MSMg01no057_a11.b1 CHROMAT_FILE:
MSMg01no057_a11.b1 PHD_FILE: MSMg01no057_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:50 2005
(657 letters)
>mm_chr11_64589122_64590178
Length = 1057
Score = 857 bits (443), Expect = 0.0
Identities = 536/595 (90%), Gaps = 47/595 (7%)
Strand = Plus / Plus
Query: 91 tgaaaatgggacaatcaaataaaaactatcaaaaagactttcaaaacgatagaaactggt 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgaaaatgggacaatcaaataaaaactatcaaaaagactttcaaaacgatagaaactggt 336
Query: 151 caatctgtagagatggctcagtggtgaaagtgctggccgtacatgcatgaggttcaaaac 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 caatctgtagagatggctcagtggtgaaagtgctggccgtacatgcatgaggttcaaaac 396
Query: 211 cttgagattaaagggcatggcgacaggaagctccagagactcactagtcacacaccctag 270
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 397 cttgagattaaaggccatggcgacaggaagctcccgagactcactagtcacacaccctag 456
Query: 271 tcaagtagcagacaccaaggtcagtgagaaatgctgtcttgaaaataaggtaaactatga 330
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 457 tcaagaagcagacaccaaggtcagtgagaaatgctgtcttgaaaataaggtaaaccatga 516
Query: 331 taagagaagctgataaaaacctggacctctgacacacctcccttcccctccactagacac 390
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 517 taagagaagctgataaaaacctggacctctgacacacctcccttcccctccgctagacac 576
Query: 391 acctacaggcacgcaaacacataacacacacatacaacacattctctctctctctctctc 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 acctacaggcacgcaaacacataacacacacatacaacacattctctctctctctctctc 636
Query: 451 tctctctctctctctctctcacacacacacacacacacacacac---------------- 494
|||||||| ||||||||||||||||||||| |
Sbjct: 637 tctctctc------------acacacacacacacacacacagaggaagagagagagagag 684
Query: 495 ----------acacacacacagagagagagagagagagaatttgtaacatacaggaataa 544
| | | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agagagagagagagagagagagagagagagagagagagaatttgtaacatacaggaataa 744
Query: 545 aaatgttcaaataactatatatccacatttaaaattgtatttatacataaaataactcaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaatgttcaaataactatatatccacatttaaaattgtatttatacataaaataactcaa 804
Query: 605 actgaagtaaggaattccttcctggtctccc--accagattcctctaaggctgca 657
|||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 805 actgaagtaaggaattccttcctggt-----gga--agattcctctaaggctgca 852
Score = 219 bits (113), Expect = 7e-61
Identities = 137/151 (90%), Gaps = 10/151 (6%)
Strand = Plus / Minus
Query: 373 ttcccctccactagacacacctacaggcacgcaaacacataacacacacatacaacacat 432
||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 274 ttcccctccgctagacacacctacaggcatgcaaacacataacacacacatataacacat 215
Query: 433 tctctctctctctctctctctctctctctctctctctcacacacacacacacacacacac 492
|||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 214 tctctctctctctctcactctctctctctctctct----------cacacacacacacac 165
Query: 493 acacacacacacagagagagagagagagaga 523
|||||||||||||||||||||||||||||||
Sbjct: 164 acacacacacacagagagagagagagagaga 134
Score = 78.1 bits (40), Expect = 2e-18
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 431 attctctctctctctctctctctctctctctctctctctc 470
||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 attctctctctctctctctctctctctctctctctctctc 686
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 433 tctctctctctctctctctctctctctctctctctctc 470
||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tctctctctctctctctctctctctctctctctctctc 672
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 433 tctctctctctctctctctctctctctctctctctctc 470
||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tctctctctctctctctctctctctctctctctctctc 674
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 433 tctctctctctctctctctctctctctctctctctctc 470
||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tctctctctctctctctctctctctctctctctctctc 676
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 433 tctctctctctctctctctctctctctctctctctctc 470
||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tctctctctctctctctctctctctctctctctctctc 678
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 433 tctctctctctctctctctctctctctctctctctctc 470
||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tctctctctctctctctctctctctctctctctctctc 680
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 433 tctctctctctctctctctctctctctctctctctctc 470
||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tctctctctctctctctctctctctctctctctctctc 682
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 433 tctctctctctctctctctctctctctctctctctctc 470
||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tctctctctctctctctctctctctctctctctctctc 684
Score = 72.3 bits (37), Expect = 1e-16
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 433 tctctctctctctctctctctctctctctctctctct 469
|||||||||||||||||||||||||||||||||||||
Sbjct: 707 tctctctctctctctctctctctctctctctctctct 671
Score = 64.5 bits (33), Expect = 3e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 431 attctctctctctctctctctctctctctctct 463
|||||||||||||||||||||||||||||||||
Sbjct: 120 attctctctctctctctctctctctctctctct 152
Score = 60.7 bits (31), Expect = 4e-13
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 435 tctctctctctctctctctctctctctctct 465
|||||||||||||||||||||||||||||||
Sbjct: 122 tctctctctctctctctctctctctctctct 152
Score = 60.7 bits (31), Expect = 4e-13
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 437 tctctctctctctctctctctctctctctct 467
|||||||||||||||||||||||||||||||
Sbjct: 122 tctctctctctctctctctctctctctctct 152
Score = 60.7 bits (31), Expect = 4e-13
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 439 tctctctctctctctctctctctctctctct 469
|||||||||||||||||||||||||||||||
Sbjct: 122 tctctctctctctctctctctctctctctct 152
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 441 tctctctctctctctctctctctctctctc 470
||||||||||||||||||||||||||||||
Sbjct: 122 tctctctctctctctctctctctctctctc 151
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 192
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 18
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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