BAC Information

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BAC

Clone NameMSMg01-057B01
Chromosome11 (Build37)
Map Location 121,607,609 - 121,608,256
singlet/doubletsinglet
Overlap genenone
Upstream geneHmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl
Downstream genePtchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057B01.T7 (MSMg01no057_b01.b1)MSMg01-057B01.TJ (MSMg01no057_b01.g1)
ACCAG284316AG284317
length707699
length of high quality
(start - end)
650 (45 - 694)563 (72 - 634)
definitionCHROMAT_FILE: MSMg01no057_b01.b1 PHD_FILE: MSMg01no057_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:53 2005CHROMAT_FILE: MSMg01no057_b01.g1 PHD_FILE: MSMg01no057_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAA
TTCTTTTCAAAGCCGTGGCCCCGTACACAAAGGAAGTGTAGGGTTTTATT
CAAGGAGTCTACACACATTTAGGTAGAAAAACAGTGTGAGGGTCAGCACA
TTCCTGGGTGTGCTTGGCTTAGATCATAGTGCAAGGAGGAACGATGACAC
ATTCTTCAGCATGCTTAGCATAAATTATTGAGTTGAGTAGTTGAAAGAAA
CATCTCTGAGCATGCTCAATTTTCTCCAAAAGGCTATAACTTAAAAAGGA
AAGGAAACTTTGAAGGTGTGTTAACACAGGCATTTCTTCCTAAAGGGTTC
TGCTTTAGTTAGTTAATGGGTAAAATCTTAATATCCATAGATCATCCACC
TAATCTACATATTCAGGCGCTGTGTGGTACCAATTTGTGGCCACAACTGT
CCCACTTCAATTTTTGTGTGGATATATAGAGGGCCTTGCACACCCCATCA
GTGGAAGTTAATGTCTGAAAATTCCCCATCTGGGTCCTCTGTTCCTTCCT
AATCAAAACAGCAATGTCTTTAGACTGCTTTACAGCCTGTCACTTTGCCA
CATGCACAGAATATGAAGGTCAGCAGTGCTGTGCAGCCAAGTGTAAGTAA
GCAATGCAGTTATATCTACTATTTAACAAAACAGCATGTTTGTGCTCAGT
TCTATCN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATTATCTGCAAACAGAGATGCTTTGACT
TCTTCCTTATTGCATTATATTCCTTTTATTTGCTTTATACTGTTCTAAGA
TTTTTTCAGTACCATCTTGAATAAGAGTCAGGAAAGTGGAAACCCTTCTT
TTCTCCATTTAATATAACATCAGCTAAAGGCTTGCCATACATATTATGGT
GAGATGTGTTTCTTATAGTCTGAGTTTCTTTGGGATGTTTGACATGATTG
ATATTGGCTTTGTCAAAAGTCTTCCATGTCTATCAAGATGTCATATGATT
TCTATTCTATAAAAAAAGAGATCACTTGTGAAATTTATAAAATCTATTGA
TTGACATATTGAACCAGCACTACATCTCTGGAATAAACCAGCTTGATCAT
GTTGAGTGACTTTTTGATATATTATTGAATGAAGTTTGCAAGTATTTTTA
AATAAATTTTGCATATATGTATACTTGTTTTGGACATTGGTCAGTAATTT
TTTTACTTTGTTTTTTTATCTTGTTTTATTATCAGGCTAATACTAGTTTC
ATAGAGTTTGATAATATAGCCTTCCTTTGCTATTTAATAGAATAGGTTGA
AAAGCATTTGTGTATTTCATTAAAAGTCTGGTAATTTTTTTAATTAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_b01.b1 MSMg01no057_b01.b1 CHROMAT_FILE:
MSMg01no057_b01.b1 PHD_FILE: MSMg01no057_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:53 2005
         (650 letters)



>mm_chr11_121607407_121608456
          Length = 1050

 Score = 1222 bits (632), Expect = 0.0
 Identities = 644/648 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcttttcaaagccgtggccccgtacacaaaggaagtgtagggttttattcaagga 62
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcttttcaaagctgtggccccgtacacaaaggaagtgtagggttttattcaagga 262

                                                                       
Query: 63  gtctacacacatttaggtagaaaaacagtgtgagggtcagcacattcctgggtgtgcttg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtctacacacatttaggtagaaaaacagtgtgagggtcagcacattcctgggtgtgcttg 322

                                                                       
Query: 123 gcttagatcatagtgcaaggaggaacgatgacacattcttcagcatgcttagcataaatt 182
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 323 gcttagatcatagtgcaaggaggaaagatgacacattcttcagcatgcttagcataaatt 382

                                                                       
Query: 183 attgagttgagtagttgaaagaaacatctctgagcatgctcaattttctccaaaaggcta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 attgagttgagtagttgaaagaaacatctctgagcatgctcaattttctccaaaaggcta 442

                                                                       
Query: 243 taacttaaaaaggaaaggaaactttgaaggtgtgttaacacaggcatttcttcctaaagg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taacttaaaaaggaaaggaaactttgaaggtgtgttaacacaggcatttcttcctaaagg 502

                                                                       
Query: 303 gttctgctttagttagttaatgggtaaaatcttaatatccatagatcatccacctaatct 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gttctgctttagttagttaatgggtaaaatcttaatatccatagatcatccacctaatct 562

                                                                       
Query: 363 acatattcaggcgctgtgtggtaccaatttgtggccacaactgtcccacttcaatttttg 422
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acatattcaggggctgtgtggtaccaatttgtggccacaactgtcccacttcaatttttg 622

                                                                       
Query: 423 tgtggatatatagagggccttgcacaccccatcagtggaagttaatgtctgaaaattccc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgtggatatatagagggccttgcacaccccatcagtggaagttaatgtctgaaaattccc 682

                                                                       
Query: 483 catctgggtcctctgttccttcctaatcaaaacagcaatgtctttagactgctttacagc 542
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 catctgagtcctctgttccttcctaatcaaaacagcaatgtctttagactgctttacagc 742

                                                                       
Query: 543 ctgtcactttgccacatgcacagaatatgaaggtcagcagtgctgtgcagccaagtgtaa 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctgtcactttgccacatgcacagaatatgaaggtcagcagtgctgtgcagccaagtgtaa 802

                                                           
Query: 603 gtaagcaatgcagttatatctactatttaacaaaacagcatgtttgtg 650
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gtaagcaatgcagttatatctactatttaacaaaacagcatgtttgtg 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)