BAC Information

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BAC

Clone NameMSMg01-059D14
Chromosome11 (Build37)
Map Location 16,459,712 - 16,460,199
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665660, Vstm2, Sec61g, Akt2-ps
Downstream geneLOC665689, LOC627583, Egfr, 2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059D14.T7 (MSMg01no059_d14.b1)MSMg01-059D14.TJ (MSMg01no059_d14.g1)
ACCAG285953AG285954
length692688
length of high quality
(start - end)
562 (68 - 629)493 (77 - 569)
definitionCHROMAT_FILE: MSMg01no059_d14.b1 PHD_FILE: MSMg01no059_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:40 2005CHROMAT_FILE: MSMg01no059_d14.g1 PHD_FILE: MSMg01no059_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCATAATTTGCGGCGCTAAACGACTCCTAATCCGAGAAGAGCCGCGG
AATTCAAATATTTGCAAATAAACTATTAAATGAGTTTAAAGAGGAAAGGA
AAAAAAATCATGAATGAATTCCAAGAGAACACAAATAAACAGCTGAATGA
AATATAAAATTCAGCTCAGGATACAAAAATGGGAATTGATAAAGAAATAG
AAGGGCTGAAGAAAAGCCAAACTGAAATAAAGCTGGAAATTAAAAATAAG
ACAAATCAAATAGAAATGTCAATGGAAATCCTCGTCAAGAAAATGGATGA
CACACAGAGTAGAGTAGTGGGGCTTATAGGAAACAAATGAGGACTTCAGT
CATCTAATCAAAGAAAGTGATGAATTGGGGGCTGTGGGGGAATCACAAGA
CTAGAACATGTTCTGTGTTAAAAGACCAAATCTATGAATTATGGCATGGA
TGAAAGACAATTACAAGACAAAGGCATGGAAATATTTTCAATAAAATCAA
ATTTAAAAATCACATAGTTTAAAAAAGAGATGCCCATACATGTATGAGGC
ACGTAGAACACAAAATAGATATAAGCAGGAGAGAAACACCCTCCACATCC
ACTTATACTCAAAACACTAAACACCCTTAACAAAAACTAAAGACTAAAAA
CATACCAAAAGCTGAAAGATAGGGGCCCATTACCACAAGGGC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGTGTAAAAGACCTGGAAGTGAA
TACTGACTGTAGGTAAGGCGTTCTGATCCATGTAGAAGGCATTTATAGGG
CACCACAAAGATGACTAACCGGGAAACTGTTCTCCATTCTCATAGGAATG
TGGACTTTATGCCAATAAATTACAATATTATTCATAGTACTAATAATTAA
ACTAGTGCTGGCTTTCTACAGAGAAAGATTATTCGACTTTATTTTTGTGA
GAATTTTTTATTCTTTTCTAGGAGCCTAAGTCTGATGTTTAGACAGCTGT
GAAGTAGTACGTTCAATACTTCTCTTGTATAAATAAATTAATTTTGCCTA
GAAATTAGATTTTTCTTGTTTATATCTAACATACAGACAACACATCGAGT
AACACATCGTTTCTAGTCATTTTATGTATTAGTGAAACCCAGGATTTGGA
ACTCCACTGCGCAGTGTGTATACATTTTCATTCTGACATCTTAACGAACT
AAAGGGGTCCTGTTCTGAATACATATATACATTCCGAGGAACGCGTTTAC
ACCGAGGAGTGCATGATATACCAGAGGCCACTGTGCACTGTGGGCTCCTC
CCCGCTCTCGTTTAGTGGGAGGCTGCAAAAAGTCTAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_d14.g1 MSMg01no059_d14.g1 CHROMAT_FILE:
MSMg01no059_d14.g1 PHD_FILE: MSMg01no059_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:40 2005
         (493 letters)



>mm_chr11_16459512_16460399
          Length = 888

 Score =  907 bits (469), Expect = 0.0
 Identities = 485/493 (98%), Gaps = 5/493 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtgtaaaagacctggaagtgaatactgactgtaggtaaggcgttctgatccatgtaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 688 tagtgtaaaagacctggaagtgaatactgactgtaggtaaggcgttctgatccaggtaga 629

                                                                       
Query: 61  aggcatttatagggcaccacaaagatgactaaccgggaaactgttctccattctcatagg 120
           ||||||||||||||||||||||||||||||     |||||||||||||||||||||||||
Sbjct: 628 aggcatttatagggcaccacaaagatgact-----ggaaactgttctccattctcatagg 574

                                                                       
Query: 121 aatgtggactttatgccaataaattacaatattattcatagtactaataattaaactagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aatgtggactttatgccaataaattacaatattattcatagtactaataattaaactagt 514

                                                                       
Query: 181 gctggctttctacagagaaagattattcgactttatttttgtgagaattttttattcttt 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gctggctttcaacagagaaagattattcgactttatttttgtgagaattttttattcttt 454

                                                                       
Query: 241 tctaggagcctaagtctgatgtttagacagctgtgaagtagtacgttcaatacttctctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tctaggagcctaagtctgatgtttagacagctgtgaagtagtacgttcaatacttctctt 394

                                                                       
Query: 301 gtataaataaattaattttgcctagaaattagatttttcttgtttatatctaacatacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtataaataaattaattttgcctagaaattagatttttcttgtttatatctaacatacag 334

                                                                       
Query: 361 acaacacatcgagtaacacatcgtttctagtcattttatgtattagtgaaacccaggatt 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 333 acaacacatcgagtaacacatcatttctagtcattttatgtattagtgaaacccaggatt 274

                                                                       
Query: 421 tggaactccactgcgcagtgtgtatacattttcattctgacatcttaacgaactaaaggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tggaactccactgcgcagtgtgtatacattttcattctgacatcttaacgaactaaaggg 214

                        
Query: 481 gtcctgttctgaa 493
           |||||||||||||
Sbjct: 213 gtcctgttctgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 888
Length adjustment: 10
Effective length of query: 483
Effective length of database: 878
Effective search space:   424074
Effective search space used:   424074
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)