Query= MSMg01no059_j20.b1 MSMg01no059_j20.b1 CHROMAT_FILE:
MSMg01no059_j20.b1 PHD_FILE: MSMg01no059_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:09 2005
(438 letters)
>mm_chr11_89776148_89776985
Length = 838
Score = 826 bits (427), Expect = 0.0
Identities = 433/435 (99%)
Strand = Plus / Plus
Query: 4 gaattcttaaaattgatcgagttttcttcaactttatttttctttttcaagtttaattct 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttaaaattgatagagttttcttcaactttatttttctttttcaagtttaattct 263
Query: 64 aactactctagtttccttaacacccgatgcagtctttatgatcattcagcttctacttcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aactactctagtttccttaacacccgatgcagtctttatgatcattcagcttctacttcc 323
Query: 124 aagcatagtatagagccttaataggacttaactataacttagaatatatgtgtttactgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagcatagtatagagccttaataggacttaactataacttagaatatatgtgtttactgt 383
Query: 184 attgagttttctgtctgtgaatatggcattttgtttatattttatcatttaaaagcttgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attgagttttctgtctgtgaatatggcattttgtttatattttatcatttaaaagcttgt 443
Query: 244 agttttcccaacatacatattttgtacatatttttaggtttatattcaaatgatttctat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agttttcccaacatacatattttgtacatatttttaggtttatattcaaatgatttctat 503
Query: 304 tatataggggtaatgttactttaactctatgtattttataactcaggagaaatgctgtta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tatataggggtaatgttactttaactctatgtattttataactcaggagaaatgctgtta 563
Query: 364 tgtgttaagctcgacttttgcatagttaatggtagtctatagacacatgttttatttgta 423
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtgttaagcttgacttttgcatagttaatggtagtctatagacacatgttttatttgta 623
Query: 424 tatgttgatggtgtt 438
|||||||||||||||
Sbjct: 624 tatgttgatggtgtt 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_j20.g1 MSMg01no059_j20.g1 CHROMAT_FILE:
MSMg01no059_j20.g1 PHD_FILE: MSMg01no059_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:10 2005
(539 letters)
>mm_chr11_89950043_89950981
Length = 939
Score = 975 bits (504), Expect = 0.0
Identities = 515/522 (98%), Gaps = 6/522 (1%)
Strand = Plus / Minus
Query: 24 tgctcaccatgaaattttctgcctaaggagaaggaccttcacaagctcaacatcatagga 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 tgctcaccatgaaattttctgcctaaggagaaggaccttcacaagctcaacatcatagga 880
Query: 84 aggctaagggtgattattaaatggacacacacacatatattcatgtgtctgcatatatga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 aggctaagggtgattattaaatggacacacacacatatattcatgtgtctgcatatatga 820
Query: 144 atgtatgcacacacatgcatgtacacactcatg------cacacacacacacacacacac 197
||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 819 atgtatgcacacacatgcatgtacacactcatgcacacacacacacacacacacacacac 760
Query: 198 acacacacacacacacacactcctgtagcagtaactaatttgtaaatatatttgtatatt 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 acacacacacacacacacactcctgtagcagtaactaatttgtaaatatatttgtatatt 700
Query: 258 gtaagtaatttgttccttgatgatacagaaacaaatcaccaaaagttttcacaaactcga 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gtaagtaatttgttccttgatgatacagaaacaaatcaccaaaagttttcacaaactcga 640
Query: 318 aaacctataaactgcccagcagaaatgaaaacattctaaagggatacttgcatctctcaa 377
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 639 aaacctataaactgcccagcagaaatgaaaatattctaaagggatacttgcatctctcaa 580
Query: 378 tctatcagactgccaaaacaatgaacttcagttaaatgggaactcccccaggagtctcag 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tctatcagactgccaaaacaatgaacttcagttaaatgggaactcccccaggagtctcag 520
Query: 438 gcttggagagatggaaaaaccaccagccagaaagagattctaaacagttttaccaacttc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gcttggagagatggaaaaaccaccagccagaaagagattctaaacagttttaccaacttc 460
Query: 498 taggatcactttagatgtaatgggtcagaacttgattggtaa 539
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 taggatcactttagatgtaatgggtcagaacttgattggtaa 418
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
