BAC Information

Click to search

BAC

Clone NameMSMg01-059M07
Chromosome11 (Build37)
Map Location 85,344,419 - 85,345,075
singlet/doubletsinglet
Overlap geneBcas3
Upstream geneMrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
Downstream geneTbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059M07.T7 (MSMg01no059_m07.b1)MSMg01-059M07.TJ (MSMg01no059_m07.g1)
ACCAG286369AG286370
length731731
length of high quality
(start - end)
640 (46 - 685)657 (73 - 729)
definitionCHROMAT_FILE: MSMg01no059_m07.b1 PHD_FILE: MSMg01no059_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:21 2005CHROMAT_FILE: MSMg01no059_m07.g1 PHD_FILE: MSMg01no059_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAA
TTCCTAAGATATACCCTACCTATCACACACTTCATCTATTTAAAACAGCA
ATTCTCAACAGGGGGAATACAATCCCTTTGGGGTTGCACATCAGATAGCC
TTCATATCAGATATTTACACAACAGTCCATAACAGTAGCAAAATTATAGT
TATGAAGTAGCAACAAAAGAATTTTATAGTTAGGGGTCATCATAGCATGA
GAAACTATATGAAAGGGCCACAGCATTGGGAAGGTTGAGAACCACTGATT
TAAAAGATATAATTCAATGGTGTTTCAGCATTTTTTGGAATTGAACAAAG
ATTATTATAATCTAGCTCTGACCATTCTGCATACTCTCAGGAGCTCTGTA
CTCCTCTGCTGGCACCTCCTCATCTCCCTGTGCTCCTAACTGTGGGAGTA
CAGTCTCTCTCTCTTCCTATCTCTTCCATCTATAAGATGGAACCGTATAA
CATGGAGCCCTTTGTGACCAACTTCTCATTACAGATGTTTACAAAGTGCA
TCTATGAAGTGGTTTGTGTGAGAACTTCATTCCTAGCAGAAGGTGATGGT
GCACACCTGTAATCTCGCCCACTCAGGAAGCTGATGCTAGAGAGGACCTT
GAGTTTGAGGCCAGACTAGACAACTTACTGAAAGTGTGGTTGAAAACAAA
ATTAGGGGTGGAAATGCACCTTGCTGTTAAG
AATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTCCTGACACTATTTTTTATTGAATC
TGTATTTGTGGTACAAATTAGGAAAAACTATCCTTACTTCTCAGTACCCA
TCAAAAGGCAAACCAGCTTCTTTTACAGTTCTCATAGTAAGGAGAAATAG
TGAATTTTTATCAAAACAGTGGCCTTTCTAAGGATGAACAAAAAACCATA
CTGCATTTAGAAACAAGAATTCTGGGGGCTATGAAACCTGGTAAATTGCT
GATGTATAAGTGTGAAAACCTGAGGTTTCGGTCTGTAGCACTCATCTACA
AAGCCATGTCCAACAGCACAGATATTCCCAGTGTTGAGGGCTGAAACCTA
CCTGAGAGCTCCCTATCCAGCCTACCTACCCGAGTCAGCGCGTGCGTGGG
TTAGGTTCAGTCCAATGCCCTGTCTTAGAGTGTAAAGTGAAAAGTGACCA
AGGAAATGCCTGACATGGACCTTTATGTGCACACACGCATGAGTGTACCT
TTGTGCACATGTACACAGCAAAGTGAAAAACAAAAATCCATCTGCAATTT
CTAAAACTAGTTGCTATGGTTACTTCAGTGACCTGTAATGTTGGTTGCTT
CCAGTCTGTATGAAGTTTCATAATACTTGTACCAATTTCCTTTAAATTTT
ATCTTGCTTTTTTTTTCATTCATTTGTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_m07.g1 MSMg01no059_m07.g1 CHROMAT_FILE:
MSMg01no059_m07.g1 PHD_FILE: MSMg01no059_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:21 2005
         (657 letters)



>mm_chr11_85344219_85345275
          Length = 1057

 Score = 1263 bits (653), Expect = 0.0
 Identities = 656/657 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttcctgacactattttttattgaatctgtatttgtggtacaaattaggaaaaactatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttcctgacactattttttattgaatctgtatttgtggtacaaattaggaaaaactatc 260

                                                                       
Query: 61  cttacttctcagtacccatcaaaaggcaaaccagcttcttttacagttctcatagtaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttacttctcagtacccatcaaaaggcaaaccagcttcttttacagttctcatagtaagg 320

                                                                       
Query: 121 agaaatagtgaatttttatcaaaacagtggcctttctaaggatgaacaaaaaaccatact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaatagtgaatttttatcaaaacagtggcctttctaaggatgaacaaaaaaccatact 380

                                                                       
Query: 181 gcatttagaaacaagaattctgggggctatgaaacctggtaaattgctgatgtataagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatttagaaacaagaattctgggggctatgaaacctggtaaattgctgatgtataagtg 440

                                                                       
Query: 241 tgaaaacctgaggtttcggtctgtagcactcatctacaaagccatgtccaacagcacaga 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaaacctgaggtttcggtttgtagcactcatctacaaagccatgtccaacagcacaga 500

                                                                       
Query: 301 tattcccagtgttgagggctgaaacctacctgagagctccctatccagcctacctacccg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattcccagtgttgagggctgaaacctacctgagagctccctatccagcctacctacccg 560

                                                                       
Query: 361 agtcagcgcgtgcgtgggttaggttcagtccaatgccctgtcttagagtgtaaagtgaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtcagcgcgtgcgtgggttaggttcagtccaatgccctgtcttagagtgtaaagtgaaa 620

                                                                       
Query: 421 agtgaccaaggaaatgcctgacatggacctttatgtgcacacacgcatgagtgtaccttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgaccaaggaaatgcctgacatggacctttatgtgcacacacgcatgagtgtaccttt 680

                                                                       
Query: 481 gtgcacatgtacacagcaaagtgaaaaacaaaaatccatctgcaatttctaaaactagtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgcacatgtacacagcaaagtgaaaaacaaaaatccatctgcaatttctaaaactagtt 740

                                                                       
Query: 541 gctatggttacttcagtgacctgtaatgttggttgcttccagtctgtatgaagtttcata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctatggttacttcagtgacctgtaatgttggttgcttccagtctgtatgaagtttcata 800

                                                                    
Query: 601 atacttgtaccaatttcctttaaattttatcttgctttttttttcattcatttgttc 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atacttgtaccaatttcctttaaattttatcttgctttttttttcattcatttgttc 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)