Query= MSMg01no059_p04.b1 MSMg01no059_p04.b1 CHROMAT_FILE:
MSMg01no059_p04.b1 PHD_FILE: MSMg01no059_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:34 2005
(503 letters)
>mm_chr11_21552393_21553293
Length = 901
Score = 901 bits (466), Expect = 0.0
Identities = 491/500 (98%), Gaps = 2/500 (0%)
Strand = Plus / Minus
Query: 1 ggaattctcttctccatgccaaaggtgtctgattgcaggtgtccttttcctaatctcagg 60
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ggaattctcttctccaggcaaaaggtgtctgattgcaggtgtccttttcctaatctcagg 639
Query: 61 tatagtgcatttatgaatctttattttaattcagttaatcttattttaaaagggttttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tatagtgcatttatgaatctttattttaattcagttaatcttattttaaaagggttttgg 579
Query: 121 gaagaagaaaatatgtatcaaattttaaactagaaattccatctctatataccttaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gaagaagaaaatatgtatcaaattttaaactagaaattccatctctatataccttaagga 519
Query: 181 aaaactgaaacattatattcatgttattgtacatttaatattaaaataaatggtacttta 240
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
Sbjct: 518 aaaactgaaacattatattcatgttattgtacattcaatattaaaataaacggtacttca 459
Query: 241 caagatataaaagtaatgtaagtaaaaatgtatttctaaaaatattactctggataattg 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 458 caagatataaaagtaatgtaagtaaaaatgtatttctaaaaaaattactctggataattg 399
Query: 301 aaatagaagagtatttttataagttgttttctaataaaatatatcttagcctatagtatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aaatagaagagtatttttataagttgttttctaataaaatatatcttagcctatagtatt 339
Query: 361 aataaacattgttaaaacataattatattatttccactcaagaaacacatacaaaacaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aataaacattgttaaaacataattatattatttccactcaagaaacacatacaaaacaca 279
Query: 421 aagaacatagacctacatctcaggtacatatttaaaatgtttttttaatatcaaacagaa 480
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 278 aagaacaaagacctacatctcaggtacatatttaaaatg--tttttaatatcaaacagaa 221
Query: 481 atgtatttttatgagctagc 500
||||||||||||||||||||
Sbjct: 220 atgtatttttatgagctagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 901
Length adjustment: 10
Effective length of query: 493
Effective length of database: 891
Effective search space: 439263
Effective search space used: 439263
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_p04.g1 MSMg01no059_p04.g1 CHROMAT_FILE:
MSMg01no059_p04.g1 PHD_FILE: MSMg01no059_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:34 2005
(498 letters)
>mm_chr17_38618265_38619163
Length = 899
Score = 669 bits (346), Expect = 0.0
Identities = 466/516 (90%), Gaps = 27/516 (5%)
Strand = Plus / Plus
Query: 1 caggacagccagggctacacagagaaagcctgtcttgaaaaaaat-aatgggtc------ 53
||||| ||||||||||||| ||||||| ||||||||| ||||||| ||||||||
Sbjct: 193 caggatagccagggctacatagagaaaccctgtcttg-aaaaaataaatgggtcatattt 251
Query: 54 aat----aaagtgataatataggtacaaattaaccctcagagaaaatccaacattattaa 109
||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 252 aatgaagaaagtgataatataggtacagattaaccctcagcgaaaatccaacattattat 311
Query: 110 taaaatcttcttttacctagtctgccatgttcggtcactatctctggaaggactgatcct 169
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 312 taaaatcttcttttacctagtctgccatgtttggtcactatctctgggaggactgatcct 371
Query: 170 ttctgaaggaaaca---gagagagtaaatttgggagacagaggaggtaacagcacaacag 226
||||||||||| | || || |||||||||| ||||| ||||||| |||||||||
Sbjct: 372 ttctgaaggaa--atggga-agtgtaaatttggaagaca---gaggtaagggcacaacag 425
Query: 227 ggaggagtgagggaggtgagaatgctgttaggatgtattaaacgagagaagaata--aaa 284
|||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct: 426 ggaggagtgagggaggtgagaatgctgttaggatgtattaaatgagaga--aatatcaaa 483
Query: 285 -aaagtaaaaatataagtgtgtata-aaacataaacatgaatgtaaactgaaataagtaa 342
|||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||
Sbjct: 484 gaaagtaaaaatataagtgtgtatataaacacaaacatgaatataaactgaaataagtaa 543
Query: 343 gaccaaacatgaatctgaagggccaaaataacaaactgcaaaacaatattgcagtcttaa 402
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gaccaaacatgaatccaaagggccaaaataacaaactgcaaaacaatattgcagtcttaa 603
Query: 403 caactagcagcaagaattggcaagaatttcaatagtctgtaatactgagggaagacacac 462
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 604 caactagcagcaaaaaatggcaagaatttcagtagtctgtaatactgagggaagacaaac 663
Query: 463 tttcaaattcttttcatcatgaggcaacatctggag 498
|| |||||| ||||||||||||||||||||||||||
Sbjct: 664 ttccaaattattttcatcatgaggcaacatctggag 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 899
Length adjustment: 10
Effective length of query: 488
Effective length of database: 889
Effective search space: 433832
Effective search space used: 433832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
