BAC Information

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BAC

Clone NameMSMg01-059P10
Chromosome11 (Build37)
Map Location 86,318,422 - 86,404,363
singlet/doubletdoublet
Overlap geneRps6kb1, Tubd1, LOC100043687, Tmem49
Upstream geneBcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik
Downstream genePtrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059P10.T7 (MSMg01no059_p10.b1)MSMg01-059P10.TJ (MSMg01no059_p10.g1)
ACCAG286519AG286520
length699700
length of high quality
(start - end)		531 (48 - 578)409 (74 - 482)
definitionCHROMAT_FILE: MSMg01no059_p10.b1 PHD_FILE: MSMg01no059_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:35 2005CHROMAT_FILE: MSMg01no059_p10.g1 PHD_FILE: MSMg01no059_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,318,422 - 86,318,950)(86,403,955 - 86,404,363)
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAAGCCGCGG
AATTCTCTGACTTATCCTGTGCAATCTTCCCACTTTTACACCATAATAGT
ACAATTTTTTAATATTTTATTTTTAATTTTGTATATGCATGCACATGTTT
GTAGGTATGTGCATATGAGTGCAGATGCCTGAGGACATGAGGCACCCAGA
TCCTTAGAAGCTGTATTCATGCGATTTTGAGCTACCTAACATAGTTGCTG
GGAGCTAAATCCGGGTTCCACTACAAAAGTGCAATACAATATTAATCATT
GAGCCACATTTGTTTTGTTTTTGGTGACCAAGTGCCACCATTATGAAAAT
TCCACTGTGCAGTACACACATGCTGTTGTTTTAGTTCCCATCATCTTTAT
TAGGCTCCTGCCTAGCTCTTTCTTGCTGCACGTTTGTTTGTTCGGCCATT
AGTCCTGTTGCTGCATGCTTTTCCTGTGCGTTACCAGCTGAGTGAGCCTA
AGCATCACCGTAGCACCATCGTCCCCGAGACTATGGGTGGAGCCCAAAAG
GAAGGTGCAGCTCTGCAGGCCACACTGTGGTTGCAGAGGCCATTTCTCTC
TGTTCTGGGGGCTAAAGACCAACTTGCATTTTATTTTAATTTTTAATATT
TCCATTAATTTTTAATGAAACATTATCACAGGAGATTAAATATTTGCTA

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATGAAAGGAGGGAGGCGTGGTGCCGG
GTGGTTCTAGTGCACTTGGATTGAGTGCGACTTCTGCATGAAGCGACAAA
TAGAGCTGTGTGCATTGTGGAATACTTACCCCACCCACTCTTCAACAGAC
TCCCCCAGCTCTGCAGCTTCCTCGGGAGATCTGAGAACAAAATGACGCAA
GCCTTTATGAGTAAAGATGAGGAGAGTTCAGAATGCATATTCTTGCTAGA
TATATGATTTAGACAAATAGAGTTAAACGTTTCTAAAACTATTTTAAAAA
TAAAGATTTGGCCGGGCGGTGGTGGCGCACGCCTTTAATCCCAGCACTCG
GGAGGCAGAGGCAGGCAGGTGGATTTCTGAGTGCAAGGCCAGCCTGGTCC
ATAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGGGAAACCCTGTCTCA
TAAAACCAAAAAAAAAAAAAAAAATAAAGATTTTACTTACAAAGTGGCCA
GGACTCTTATTTCTCTCAAGTGTTATTTTGAGTGTATTTATCTGTTTGTT
GGTTTGGTTGCTCGCTTACTGCTGACCGTGCTCCCTTGCTTGATCTCTGC
CCCTTTTCCTTATTGACACGTTTGTTTTTGTCTGGCTTGCATTCCCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_p10.b1 MSMg01no059_p10.b1 CHROMAT_FILE:
MSMg01no059_p10.b1 PHD_FILE: MSMg01no059_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:35 2005
         (531 letters)



>mm_chr11_86318220_86319150
          Length = 931

 Score = 1000 bits (517), Expect = 0.0
 Identities = 526/529 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctctgacttatcctgtgcaatcttcccacttttacaccataatagtacaattttt 62
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctctgacttagcatgtgcaatcttcccacttttacaccataatagtacaattttt 262

                                                                       
Query: 63  taatattttatttttaattttgtatatgcatgcacatgtttgtaggtatgtgcatatgag 122
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 263 taatattttatttttaattttgtatatgcatgcacatgtttgtaggtatgtgtatatgag 322

                                                                       
Query: 123 tgcagatgcctgaggacatgaggcacccagatccttagaagctgtattcatgcgattttg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgcagatgcctgaggacatgaggcacccagatccttagaagctgtattcatgcgattttg 382

                                                                       
Query: 183 agctacctaacatagttgctgggagctaaatccgggttccactacaaaagtgcaatacaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agctacctaacatagttgctgggagctaaatccgggttccactacaaaagtgcaatacaa 442

                                                                       
Query: 243 tattaatcattgagccacatttgttttgtttttggtgaccaagtgccaccattatgaaaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tattaatcattgagccacatttgttttgtttttggtgaccaagtgccaccattatgaaaa 502

                                                                       
Query: 303 ttccactgtgcagtacacacatgctgttgttttagttcccatcatctttattaggctcct 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttccactgtgcagtacacacatgctgttgttttagttcccatcatctttattaggctcct 562

                                                                       
Query: 363 gcctagctctttcttgctgcacgtttgtttgttcggccattagtcctgttgctgcatgct 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gcctagctctttcttgctgcacgtttgtttgttcggccattagtcctgttgctgcatgct 622

                                                                       
Query: 423 tttcctgtgcgttaccagctgagtgagcctaagcatcaccgtagcaccatcgtccccgag 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tttcctgtgcgttaccagctgagtgagcctaagcatcaccgtagcaccatcgtccccgag 682

                                                            
Query: 483 actatgggtggagcccaaaaggaaggtgcagctctgcaggccacactgt 531
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 actatgggtggagcccaaaaggaaggtgcagctctgcaggccacactgt 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no059_p10.g1 MSMg01no059_p10.g1 CHROMAT_FILE:
MSMg01no059_p10.g1 PHD_FILE: MSMg01no059_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:35 2005
         (409 letters)



>mm_chr11_86403877_86404685
          Length = 809

 Score =  791 bits (409), Expect = 0.0
 Identities = 409/409 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaaaggagggaggcgtggtgccgggtggttctagtgcacttggattgagtgcgactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 catgaaaggagggaggcgtggtgccgggtggttctagtgcacttggattgagtgcgactt 428

                                                                       
Query: 61  ctgcatgaagcgacaaatagagctgtgtgcattgtggaatacttaccccacccactcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctgcatgaagcgacaaatagagctgtgtgcattgtggaatacttaccccacccactcttc 368

                                                                       
Query: 121 aacagactcccccagctctgcagcttcctcgggagatctgagaacaaaatgacgcaagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aacagactcccccagctctgcagcttcctcgggagatctgagaacaaaatgacgcaagcc 308

                                                                       
Query: 181 tttatgagtaaagatgaggagagttcagaatgcatattcttgctagatatatgatttaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tttatgagtaaagatgaggagagttcagaatgcatattcttgctagatatatgatttaga 248

                                                                       
Query: 241 caaatagagttaaacgtttctaaaactattttaaaaataaagatttggccgggcggtggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 caaatagagttaaacgtttctaaaactattttaaaaataaagatttggccgggcggtggt 188

                                                                       
Query: 301 ggcgcacgcctttaatcccagcactcgggaggcagaggcaggcaggtggatttctgagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ggcgcacgcctttaatcccagcactcgggaggcagaggcaggcaggtggatttctgagtg 128

                                                            
Query: 361 caaggccagcctggtccatagagtgagttccaggacagccagggctata 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 caaggccagcctggtccatagagtgagttccaggacagccagggctata 79


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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