BAC Information

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BAC

Clone NameMSMg01-059P13
Chromosome11 (Build37)
Map Location 56,166,494 - 56,166,706
singlet/doubletsinglet
Overlap genenone
Upstream geneSparc, Atox1, G3bp, Glra1, Nmur2, LOC100040816
Downstream geneLOC624168, Gria1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059P13.T7 (MSMg01no059_p13.b1)MSMg01-059P13.TJ (MSMg01no059_p13.g1)
ACCAG286525AG286526
length714727
length of high quality
(start - end)
274 (47 - 320)214 (64 - 277)
definitionCHROMAT_FILE: MSMg01no059_p13.b1 PHD_FILE: MSMg01no059_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:36 2005CHROMAT_FILE: MSMg01no059_p13.g1 PHD_FILE: MSMg01no059_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGCCGCGG
AATTCAGACATTTTTCTTTCAGACTTTTCAGAGGGATAAGTGTTTGTTTA
ACATGTGCTAAGAAAGCCCTAGTTTAGATTCTCTACCAATTCATAAATTA
GGTGCAGTGCATTTCTGTAACCCCAATCCTTGAGGGGTAGAGGCAGGAGG
ACTAGAAAGCCAAGGTCGTCCTTAGTTACATAATGCTACTAAGTTGGAGG
ACTGCCTGTGCTCCATGAAACCTTGCCGTTAAGAAACACTTCTCGGGCTT
CCTGTCCTGCAAGGTACTACCTTTTTCAGAGCAATACAAAAATACAGCCA
CACCTGAGATTATGTCATAATCTGGGAGGGAAATGAACCAGTGTCTGGGC
ATACAGGGAGATGGGCCACCAGAAGCCAGCTGTAAGAATGCTTTTATGAA
GTACAGAGCAGTCAAGGATTATGGATTCAGCGACCTTGGCTTCTGAGAGG
CTGGGGAGTTATGACAGTTATAGGCATCGGGGTCTATCTGGCAAATAGGT
AGAAATCTGGTTGAGATGATAGCATAATGCTGGATTTGGTATCATGCATA
TCCGGCGATACTCATCAATTGTACTCCCTATTGCCCCCCAACTTTACTCT
ATACCTCTTGTCATTTTCTTTGAATCATTGTCTTCGAATGATAACATCTT
CTTCATGTATACCC
ATGACAGTGGTAGGCTGGCGGCGCCTGTTTCAAACTGGXXXXXXXXXXXX
XXXXXXXXXXAGAAATTCACTGAAACTTGTGGGTGTGTCTAGCATTGGAG
AAGAATGCAACAATCAGTCATAGCATCTCAGTGGTCCTGGGTTCTTAATG
TGTTTCAGGCTCTATTCCAAGCTCCACATTCATGAATGCATGCTCACCCC
AACTTTGTGTTTGTGGTATTTGTATGTGTATGTGCTCATGTGTATGTGTG
TTGTGGGTACATGTGTTGTTGTGGGACGATGTTCATGTTCTTATTTGACT
CCACACCCCAGCCTTTTTTTTTTTCCTAATGCCTTCCTCTTTGGTTTTTT
TTTTTATTTTTTTCCCCCCCCCCCCCCTCCACGTTTTCATTTTCTATCTT
GTTATTTTTTTTTCCCCCCCCTTTATATATTTATATCCATTACTTGTCCA
TTTCCCTCTTCTTCTTTATCCTTCTTCTCTTTTCTTACTTTTATTCTCAT
TTGTCCCTTTCTTCTTGCATATTTACTTTTTTTCTCTTCTCTTTTTCTTC
TTTTTATCTTATAATCCCTTTTTTCTCCCCTTCCCCATTATATTTTCCCC
TCCCCCTTTATTTCTCCCACATCTTTCATCTAACCCCCCCTTACCTTCTA
TTTTCTTTCCCTTCCCTCCTTTTCCCTTTTCTTTTTTAATTTGCCATTTA
TCCCTTTTAACTACATCCTAATCAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_p13.g1 MSMg01no059_p13.g1 CHROMAT_FILE:
MSMg01no059_p13.g1 PHD_FILE: MSMg01no059_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:36 2005
         (214 letters)



>mm_chr11_56166365_56166978
          Length = 614

 Score =  412 bits (213), Expect = e-120
 Identities = 213/213 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcactgaaacttgtgggtgtgtctagcattggagaagaatgcaacaatcagtcatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aattcactgaaacttgtgggtgtgtctagcattggagaagaatgcaacaatcagtcatag 283

                                                                       
Query: 61  catctcagtggtcctgggttcttaatgtgtttcaggctctattccaagctccacattcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 catctcagtggtcctgggttcttaatgtgtttcaggctctattccaagctccacattcat 223

                                                                       
Query: 121 gaatgcatgctcaccccaactttgtgtttgtggtatttgtatgtgtatgtgctcatgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gaatgcatgctcaccccaactttgtgtttgtggtatttgtatgtgtatgtgctcatgtgt 163

                                            
Query: 181 atgtgtgttgtgggtacatgtgttgttgtggga 213
           |||||||||||||||||||||||||||||||||
Sbjct: 162 atgtgtgttgtgggtacatgtgttgttgtggga 130


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)