BAC Information

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BAC

Clone NameMSMg01-060P18
Chromosome11 (Build37)
Map Location 106,093,515 - 106,093,974
singlet/doubletsinglet
Overlap geneDdx42
Upstream geneTlk2, Mrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik
Downstream geneFtsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060P18.T7 (MSMg01no060_p18.b1)MSMg01-060P18.TJ (MSMg01no060_p18.g1)
ACCAG287301AG287302
length688680
length of high quality
(start - end)
455 (60 - 514)481 (68 - 548)
definitionCHROMAT_FILE: MSMg01no060_p18.b1 PHD_FILE: MSMg01no060_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:50 2005CHROMAT_FILE: MSMg01no060_p18.g1 PHD_FILE: MSMg01no060_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTCCTNNCNAACATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCAGCAGTTGACAGCACTTGCTATTATTTCAGA
GGATCTGACTTTGATTCTCAGCACCCATATCAGGTAGTTCACAACCCCCT
TTAACTCCAGCTGCAGGAGGATCCAGTGTCCCTGGCCTCCACCACATACA
AAAATGTATACAAAGTCCTAATCAAAAATAAAACATAAATCTTTGTGGTC
TCTCTCTCTCTCTTTCTCTCTTTCTCTCTTTCTCTCTTTCTCTCTTTCTC
TCTTCCTTTTTGAGACAGGGTTTCTTTGTGTAGCCCTGGCTGTCCTGGAA
CTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCTCCTGCCTCT
GCCTCCCAAGTACTGGGTTAAAGGCGTGCACCACCACTGCCTGGCAATAA
AACATAAATCTTAAAAGAGTGGGTTTTGTTGTCTCTGAATTGAATTGCTG
TAACACATTAGAATTTACAGAATATAACACACTAGAAAATAATGGTCTTT
AGTCCTAAGAGGGGGGTGTGGACATGGGTTCCACCCCTAACTGACAAGCT
GCTTGCATCTGATACCCGATGGCAAAGTGGAATCAATATCTTTCTATTGG
AGTGTCATTACGTGTATCAACCTTATTCCAGTGCTTGG
ATGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTTATTTCTGACCACTCTTAAAAAAGACAGCC
TATATTTTTTCCAACTCCAACTTTCTTCTTTTTGTTTGTTTTTTTGTTTG
TTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCT
GTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTGCCA
AGTGCTGGGATTAAAGGTGTACGCCACCACACCCGGCTTGAACTCCTACT
TTCAAAACAGACACCAATTTACTTTCCACAGACATCTCAGACTTTAATAA
CATGCAGCAGAATAAAGAATGGCTGTAGTGCTAAAGGTCTCAGAGGACAA
ATTTTTAAAAAGAAATTATTTTACAAATATCATTAATGCTTAGGATTAAG
TTGTTCATCCAGGTCCAAGCATTTAAAAACATTATCAGTATTTCCTTTAG
AGATAGGTTTGTCTTGAGAAGGAATTCTAATTTTTTTTTTTTTTAAAGCA
TGGAATTAGGGCTAGAGAAATGGCTCTTGCTGAGGATCCAACTTCAGTTT
CCAGCATTTACCCCCCGTGGGTTTCACCTCTAGAGACGAGGGACCGCTTG
TGCGCCTTGGGCCCTGCTGTTCTTGGGCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_p18.g1 MSMg01no060_p18.g1 CHROMAT_FILE:
MSMg01no060_p18.g1 PHD_FILE: MSMg01no060_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:50 2005
         (481 letters)



>mm_chr11_106093094_106093974
          Length = 881

 Score =  874 bits (452), Expect = 0.0
 Identities = 458/460 (99%), Gaps = 1/460 (0%)
 Strand = Plus / Minus

                                                                       
Query: 16  ctcttaaaaaag-acagcctatattttttccaactccaactttcttctttttgtttgttt 74
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 ctcttaaaaaagtacagcctatattttttccaactccaactttcttctttttgtttgttt 822

                                                                       
Query: 75  ttttgtttgtttgagacagggtttctctgtgtagccctggctgtcctggaactcactctg 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ttttgtttgtttgagacagggtttctctgtgtagccctggctgtcctggaactcactctg 762

                                                                       
Query: 135 tagaccaggctggcctcgaactcagaaatctgcctgcctctgcctgccaagtgctgggat 194
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 761 tagaccaggctggcctcgaactcagaaatctgactgcctctgcctgccaagtgctgggat 702

                                                                       
Query: 195 taaaggtgtacgccaccacacccggcttgaactcctactttcaaaacagacaccaattta 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 taaaggtgtacgccaccacacccggcttgaactcctactttcaaaacagacaccaattta 642

                                                                       
Query: 255 ctttccacagacatctcagactttaataacatgcagcagaataaagaatggctgtagtgc 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ctttccacagacatctcagactttaataacatgcagcagaataaagaatggctgtagtgc 582

                                                                       
Query: 315 taaaggtctcagaggacaaatttttaaaaagaaattattttacaaatatcattaatgctt 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 taaaggtctcagaggacaaatttttaaaaagaaattattttacaaatatcattaatgctt 522

                                                                       
Query: 375 aggattaagttgttcatccaggtccaagcatttaaaaacattatcagtatttcctttaga 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aggattaagttgttcatccaggtccaagcatttaaaaacattatcagtatttcctttaga 462

                                                   
Query: 435 gataggtttgtcttgagaaggaattctaattttttttttt 474
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gataggtttgtcttgagaaggaattctaattttttttttt 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)