BAC Information

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BAC

Clone NameMSMg01-061B04
Chromosome11 (Build37)
Map Location 62,385,966 - 62,386,156
singlet/doubletsinglet
Overlap genenone
Upstream geneEpn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb
Downstream geneTrpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061B04.T7 (MSMg01no061_b04.b1)MSMg01-061B04.TJ (MSMg01no061_b04.g1)
ACCAG287368AG287369
length789716
length of high quality
(start - end)
191 (70 - 260)447 (75 - 521)
definitionCHROMAT_FILE: MSMg01no061_b04.b1 PHD_FILE: MSMg01no061_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:57 2005CHROMAT_FILE: MSMg01no061_b04.g1 PHD_FILE: MSMg01no061_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNGACTCCGCGGA
ATTCCAGGCCAGTTCTCTCTACATAGTGAGACTTCAAAACAACAACAATA
ACAACAACATGTATTAAGCACTCATTGTGTCTGATACCATGCTAAGTGCT
CCGGTTATGACCCTTAGAGCAAGCTTATTTCACAGATGATGAGGCTGAAG
GTAGGCAAGTGTAGACCACATGGGTAGGAAGTGGGGAAGAAAATATTTAA
ACCCAGAGCCACACCCTGGACACTTGTGCTTTCCAGGGGACGAGCATGCA
CTTTTGACATACCCACATCTTCCTTTGTCGCTTATTAACCCTGCACTACT
CCGCTCTGCTTTATATGTCATTGTCCCTCTTATTTCTTTCTCTGTTCTCC
TGAAGTATTATTGTTTACCCCCCCCGGTATTATGACCAGCGAGCTTTATA
TTGGCTATACAAATGTCTTAACTCCTTATATTGGGCACTGTCGCTCGCCT
CCCCTCTAATTGTTTCTCTTTCCTTTTTTGTCTTGATCCCTTGACCCTGC
TTCCCTCTTTTCTGCTTTCCCATGCTTTCCTCCTAATTCATATGCCCTCT
CTCACACTATCTGTTGTTACAATTAACTTTTTTTTTTTTTCCATGCCTTC
TGCCCCTCTTCGCTCCCACATGTTCCCCCCTCCTCCTAACATCTTCCACA
TCCTCTTCTCCCCACCCCNCCCCCCCTTTTTATTTCCTCTTGCCTTCCGT
CAACTTTCTTTTTTCTCTTTTACGTATCATTATTTTTAT
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGAGACAGAACCATGCAGATCTCTG
AGTTCAAAGTCAGTCTACAGAACAAGTTTCAGGACAGCCAAGCTTGGGCA
GTGAAGGAAAGCATTGGAAAACAGAAAGTTGGTGAGGATATAATGTAACA
AGGGGACCATGTTCCAGCCACAGAAAGCAGCTGAACTTTGGCAGCTTCGG
TCATGTGTCTCTGGCTTTATAGTCAAGAGGAGGAGATTACTGGGAGAATT
GATGCTGGTTAGCCCGAGCTAGGAAATCAGTGGTGATTAAGAAGAGACCA
GCATCACTGAGGTGAAACCTTCTGGGAAGTGTTTTCTGAGAGCACAAAGA
AGCTGTGTTCTAGAGATAGCCAAGGTTGTAGCACCTCATGCTGCACTTGG
ACTTGGTAATGTGCAAGAGTCACCCAGGTGGTAATGGTTTTGAAGGCAGG
AAGGGGTCATGGAGAGCAGCTGAGGCTTGTCACTGCGAGAGGTCAGGCAA
GGCTACTGGTGAAGATGCTGCCTCAATTGCAGCTGAAGGCCCAAGACTGA
TTGTGTCATGCACAGAATTTTGAGGCTTTGTACCATGCATAGAGCCCATT
AGAGGCTATCTGATAACCCCTACTTGCCCCCCATGACCCCATTACGATTG
GATTATGCCACCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_b04.b1 MSMg01no061_b04.b1 CHROMAT_FILE:
MSMg01no061_b04.b1 PHD_FILE: MSMg01no061_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:57 2005
         (191 letters)



>mm_chr11_62385766_62386356
          Length = 591

 Score =  333 bits (172), Expect = 5e-96
 Identities = 187/192 (97%), Gaps = 2/192 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacatagtgagacttcaaaacaacaacaataacaacaacatgtattaagcactcattgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tacatagtgagacttcaaaacaacaacaataacaacaacatgtattaagcactcattgtg 332

                                                                       
Query: 61  tctgataccatgctaagtgctccggt-tatgacccttagagcaagcttatttcacagatg 119
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 331 tctgataccatgctaagtgctcc-gtgtatgacccttagagcaagcttatttcacagatg 273

                                                                       
Query: 120 atgaggctgaaggtaggcaagtgtagaccacatgggtaggaagtggggaagaaaatattt 179
           ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||
Sbjct: 272 atgaggctgaaggtaggcaagtgtagaccacatgggtgggaagtgaggaagaaaagattt 213

                       
Query: 180 aaacccagagcc 191
           ||||||||||||
Sbjct: 212 aaacccagagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)