Query= MSMg01no061_c02.b1 MSMg01no061_c02.b1 CHROMAT_FILE:
MSMg01no061_c02.b1 PHD_FILE: MSMg01no061_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:01 2005
(641 letters)
>mm_chr11_23711949_23712989
Length = 1041
Score = 654 bits (338), Expect = 0.0
Identities = 357/364 (98%), Gaps = 4/364 (1%)
Strand = Plus / Minus
Query: 5 gaattcaccctctatc-acaaagaaagttcaaggctagcctaggtggcatgaggtcctgt 63
|||||||||||| | | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 361 gaattcaccctc-aactacaaagaaagttcaagactagcctaggtggcatgaggtcctgt 303
Query: 64 ctctaaaagaggtgtgtatgtgaggggaggcacaaagccctatgtttgacctcaagtaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctctaaaagaggtgtgtatgtgaggggaggcacaaagccctatgtttgacctcaagtaaa 243
Query: 124 tgggtttatggtgatagaagcatactatcctatcactgggaggcaagaggtcaaggtcac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgggtttatggtgatagaagcatactatcctatcactgggaggcaagaggtcaaggtcac 183
Query: 184 cctgggtgacataatgaatttgagaccagcccaagatacatgaatccctcaaaaaaaaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 182 cctgggtgacataatgaatttgagaccagcccaagatacatgaatccctcaaaaaaa--g 125
Query: 244 agagagagatcggatagctccatgagtaaagtgcttgccattcaagcaagaggacctgta 303
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 124 agagagagatcggatagctccatgagtaaagtgtttgccattcaagcaagaggacctgta 65
Query: 304 ttccacaacagaacacatgtgaaaaagccaggcatggtggtgcacacttgaactcttaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ttccacaacagaacacatgtgaaaaagccaggcatggtggtgcacacttgaactcttaga 5
Query: 364 acta 367
||||
Sbjct: 4 acta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_c02.g1 MSMg01no061_c02.g1 CHROMAT_FILE:
MSMg01no061_c02.g1 PHD_FILE: MSMg01no061_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:01 2005
(630 letters)
>mm_chr11_23553852_23554882
Length = 1031
Score = 1149 bits (594), Expect = 0.0
Identities = 621/632 (98%), Gaps = 5/632 (0%)
Strand = Plus / Plus
Query: 1 ttccttgaatatctgtggcactatacaggtacctctttctcttctttcctctaggactcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccttgaatatctgtggcactatacaggtacctctttctcttctttcctctaggactcc 260
Query: 61 ccaacatcctgatcattttttcttttctgcagtactcattattttctgactcactacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaacatcctgatcattttttcttttctgcagtactcattattttctgactcactacata 320
Query: 121 ttttgtttattgcctcccagtagattgccacaaaggcgtgctttatatccctgtcttcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgtttattgcctcccagtagattgccacaaaggcgtgctttatatccctgtcttcta 380
Query: 181 gagctgtaactgacgtgtattaggcattcaggtaatacttgttacttaataaaatatcca 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagctgtaactgacgtgtattgggcattcaggtaatacttgttacttaataaaatatcca 440
Query: 241 tagtagcttgtttaaaagctgatggcactttccttgtttttataaaccacatctaatcag 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagtagcttgtttaaaagccgatggcactttccttgtttttataaaccacatctaatcag 500
Query: 301 caaccgaatctactgtttgtccttttcacataccctggtttaaccttcaatctcttttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaccgaatctactgtttgtccttttcacataccctggtttaaccttcaatctcttttat 560
Query: 361 caagtccagctgaactcttcaaattagtattaagccttttttttttaatgtgccaaacag 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 caagtccagctgaactcttcaaattagtattaagcctttttttttaaatgtgccaaacag 620
Query: 421 gtgactagatactcagcatagtccaaccctttattgcactctctctcccttcccaccccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 gtgactagatactcagcatagtccaaccctttattgcactctctctcccttcctaccccc 680
Query: 481 act---cacccccactcaccccccaacttcaccacccttgtatgctaggcatcagacaca 537
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 --ttcccacccccactcaccccccaacttcaccacccctgtatgctaggcatcagacaca 738
Query: 538 gggtcttacatatacatgggaagcaagaaaacacttcaacaatgagctatacctctaatt 597
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 739 gggtcttacatatacatgggaagcaagaaaacactttaacaatgagctatacctctaatt 798
Query: 598 cccagtctgaactctttagaaaactatttatg 629
||||||||||||||||||||||||||||||||
Sbjct: 799 cccagtctgaactctttagaaaactatttatg 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1031
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1021
Effective search space: 633020
Effective search space used: 633020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
