BAC Information

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BAC

Clone NameMSMg01-061D09
Chromosome11 (Build37)
Map Location 93,876,943 - 93,877,142
singlet/doubletsinglet
Overlap geneSpag9
Upstream geneLOC100039286, Car10, LOC629636, Utp18, Mbtd1, Nme2, Nme1
Downstream geneLOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061D09.T7 (MSMg01no061_d09.b1)MSMg01-061D09.TJ (MSMg01no061_d09.g1)
ACCAG287473AG287474
length829723
length of high quality
(start - end)
200 (130 - 329)330 (77 - 406)
definitionCHROMAT_FILE: MSMg01no061_d09.b1 PHD_FILE: MSMg01no061_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:07 2005CHROMAT_FILE: MSMg01no061_d09.g1 PHD_FILE: MSMg01no061_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCCCCCCCTCCCTTCTCCTCCTCCCGGCCCNNNTTTACCTANNCC
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTGAATTCTAGTGTTCGAGCTCCAATTCCTACTGTTTTGCATTT
AGCTCAAGTTGGACCTTCTAGAGTTCTAGAGGATGCACTTAGTTGCATTC
TCAAACACACTTCACTTTCCAATGTTGGTAGTTATGCCTGACAACTAGCA
GTTCCTTAACAGCAGCTATCCCATCTGGGTAAGGAGGCATACAGCTAAAA
TCCAGCACTATGAAGGACGATGCTTGCTACCAGACTAGCAATATACATAA
TGAGACCCCATCTCAAAAAAAAAAAAAAAAACCCCAAAACCCAACAGCAG
GTGTTGGTATAACCCCCTAACCCGTGAGTGACGCAAGAAGCCTACTATGA
CATGGGACGCGGCTGACCCGCCAAGTGCGATCGTTAGGACACGTGGTACG
AAAAGTTAACACTGCCTTCTTCCGAGTTGTCCTCTGGCACCCACATGGAT
GCCCTGCCCCATATGCCCTGCCCCCCCAAATAATACAGTCAACCCCCCAT
TTATATGATAAACCGAGGCCCTCGACCCTTCCCCACCCATCTCCCTCCAT
TCTATAACCTCTTTAACCAGCCCCTTTTTTATAAAATTTTCCCTCTTTTC
ACAACTTCTCCCCTTACCCCCCAAGGCACTTCCCTTACTCCCTTGGAACA
CTCCCCAAATACCTCTTTACTACAGTCCACGAACACTTCACCTTGTCACC
CCTGCCCCTCCAAGAAACTGCACACCCCT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGACTTGAAATGCTTGTTACAA
TTTATTGTTTACTTTTGACTTTTTAGTCTTTTTTTTTAATTTATTTATTA
TATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCGTCAG
ATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAAC
TCCAGACCTTTGGAAGAGCAGTCGGGTACTCTTATCCACTGAGCCATCTC
AACAGCCCGACTTTTTAATCTTTTATCCCCTTACATTAATATGCACCAAA
ACTTAGCACTTAGTAGTTAACTTGCAAATATATATTGGCACCCATTGCTG
TGCTTATCTCCCAGGAGTTGCTCCTGATACTGGTAAAGTAAAGCAAGCGT
CTTCCTGTTCCCCAATCTGTGGTATAGGCTGGTGGTTTGCTCTTGCGACG
TTCTCACTGTTTACCTCACCATCAAAGAGAGTTTAGAAAGAATATATCTG
ACTTATTGCATAGTCTCCTCTGAATAACAAATAGATACTATCTCAATGAA
AAGCCCTACCGAAGTCTAGTTAATGCCATCCAAAATAACACCACACGCTG
TTCGTTTATAATTGAACCGTTCTAAACGACTCTAGATAGAAAAAAGTTTT
TCAACACAATCTTTTCTCACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_d09.b1 MSMg01no061_d09.b1 CHROMAT_FILE:
MSMg01no061_d09.b1 PHD_FILE: MSMg01no061_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:07 2005
         (200 letters)



>mm_chr11_93876743_93877342
          Length = 600

 Score =  379 bits (196), Expect = e-110
 Identities = 199/200 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcctactgttttgcatttagctcaagttggaccttctagagttctagaggatgcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aattcctactgttttgcatttagctcaagttggaccttctagagttctagaggatgcact 341

                                                                       
Query: 61  tagttgcattctcaaacacacttcactttccaatgttggtagttatgcctgacaactagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tagttgcattctcaaacacacttcactttccaatgttggtagttatgcctgacaactagc 281

                                                                       
Query: 121 agttccttaacagcagctatcccatctgggtaaggaggcatacagctaaaatccagcact 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 agttctttaacagcagctatcccatctgggtaaggaggcatacagctaaaatccagcact 221

                               
Query: 181 atgaaggacgatgcttgcta 200
           ||||||||||||||||||||
Sbjct: 220 atgaaggacgatgcttgcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space:   113664
Effective search space used:   113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)