BAC Information

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BAC

Clone NameMSMg01-061F08
Chromosome11 (Build37)
Map Location 58,534,519 - 58,693,540
singlet/doubletdoublet
Overlap geneOlfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik
Upstream geneGalnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319
Downstream geneZfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061F08.T7 (MSMg01no061_f08.b1)MSMg01-061F08.TJ (MSMg01no061_f08.g1)
ACCAG287567AG287568
length738794
length of high quality
(start - end)
461 (72 - 532)207 (72 - 278)
definitionCHROMAT_FILE: MSMg01no061_f08.b1 PHD_FILE: MSMg01no061_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:16 2005CHROMAT_FILE: MSMg01no061_f08.g1 PHD_FILE: MSMg01no061_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(58,693,123 - 58,693,540)(58,534,519 - 58,534,725)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGCAGGTCCGCGGA
ATTCATACTAATTATCTCCACAAGTCTGCCCCTCTCCTCAGCTGATCCAC
TGCCAGTGACTAGCAGGTGGCTCAAATGTTTCTTCCCAGTGTCCCTTCTG
GCTTCCTTCAGACTCTTCATAGGCTGCAGAGCTGAAAGGAAATAAACGTG
GCCCCACATGAGCAACACAGAAGCCATTCTGACAGAATCCTAATACAAAA
GGGAGCAAGTACCTCACTAATGATGAATATTATAAAACAGGGGCTGGAGA
GATGGCTCAGAGGCTAAGATCGCTTGCTGGGTTAAACTTTCATAGCAAAT
GCTGCACAAATCTGCTGACTTAGAGCAAGTCCTACAGTGAAAAATGTTGA
AGGCCAACTAGGTATTACAATCTCCTCATCAAATAGGAGCCTTTCAACAC
GGCCCTGTTTATTGGCCTACATGCCTGAGATCTCCTGGACCTTGGTTTAC
CCTACTTGGAGTCTTTACAGGTGCTCCCTGATTTTCTGGTATTTTGGTAT
AATGGTTAGATCTTGGGCATCTCTTTTCATGTTAGGATTCCGCAGGTGAA
CACCTGATACCTAACTTTTCGATAGTGACTTAGAAGTCCTGTTTGTTACT
TTGGAACTGGTAATAAACTTCCAAACCACTCTGGAAGGTTGTAACTCCTA
TCCACCCTATGAATTTTGCTCCAAAACTTGTAAATTCT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTCCCACAGCTGTGGTTTCCTGACTCCA
TGGCTTAGACTGAACCATCAGAGCAGATGTACTCTGGAAAGGGCGTGGCC
AGGTGAGGACTGTCCTTGAGGAGGAAATGACAATTATTACATGGGATAGT
TTTCTTGAATAGCTCTAGGGCACTCTCTCTTTAGGGCACATACAGGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTTTTTCCCTCCCCCCTCT
TTTTCCCCTCCTTCCCTTTTTTCCCGCCTTTTCTTTCCTTTCCTCCTTTC
CCCCTTTTTTTTCCCCCCTCTCCCCCCCTTTCCCCTTTTCCCCTTTTTTT
TTTTTCTTTGGCTCTCCGTCCCCCCCTCCTCTTTTTTTCTCGTTTTTCCC
CATTTTTCTCTCCCTTTTCCCCCTCTCCCCTCTTCTTTCCCCCGCTTCTT
CCCCCCTTTTCCTTCTCTTTTTCTTTTCCCCTCTTTTTCTCCTTTTTTTT
TTCACCCTGCCCTCCCCCTTCCCTTTTCCCCCTTTTTCCTCCCTTTTTCT
TCTTTTTTTTCCCCCTCTTCCCTTTTTTTCCCCTCTTTTCTCCCTCCTTC
TTCCTCCTTCTATCCCCTTTTTTCCGTCCTTTTTTTTCTCCTCCCTTTCC
CCTCCCTTTTTTTTTTCCCTCTCTCTGTTTCTCTCCCTCCTTTCCCCCTC
TATTTCCTCCTCCTTTCCCTTCCCCCTCTTCCCTCTCCTACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_f08.b1 MSMg01no061_f08.b1 CHROMAT_FILE:
MSMg01no061_f08.b1 PHD_FILE: MSMg01no061_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:16 2005
         (461 letters)



>mm_chr11_58693123_58693983
          Length = 861

 Score =  785 bits (406), Expect = 0.0
 Identities = 415/418 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtctgcccctctcctcagctgatccactgccagtgactagcaggtggctcaaatgttt 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 418 aagtctgcccctctcctcagctgatgcactgccagtgactagcaggtggctcaaatgttt 359

                                                                       
Query: 61  cttcccagtgtcccttctggcttccttcagactcttcataggctgcagagctgaaaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cttcccagtgtcccttctggcttccttcagactcttcataggctgcagagctgaaaggaa 299

                                                                       
Query: 121 ataaacgtggccccacatgagcaacacagaagccattctgacagaatcctaatacaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ataaacgtggccccacatgagcaacacagaagccattctgacagaatcctaatacaaaag 239

                                                                       
Query: 181 ggagcaagtacctcactaatgatgaatattataaaacaggggctggagagatggctcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ggagcaagtacctcactaatgatgaatattataaaacaggggctggagagatggctcaga 179

                                                                       
Query: 241 ggctaagatcgcttgctgggttaaactttcatagcaaatgctgcacaaatctgctgactt 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggctaagagcgcttgctgggttaaactttcatagcaaatgctgcacaaatctgctgactt 119

                                                                       
Query: 301 agagcaagtcctacagtgaaaaatgttgaaggccaactaggtattacaatctcctcatca 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 118 agagcaagtcctacagtgaaaaatgttgaagaccaactaggtattacaatctcctcatca 59

                                                                     
Query: 361 aataggagcctttcaacacggccctgtttattggcctacatgcctgagatctcctgga 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  aataggagcctttcaacacggccctgtttattggcctacatgcctgagatctcctgga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no061_f08.g1 MSMg01no061_f08.g1 CHROMAT_FILE:
MSMg01no061_f08.g1 PHD_FILE: MSMg01no061_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:16 2005
         (207 letters)



>mm_chr11_58534319_58534925
          Length = 607

 Score =  377 bits (195), Expect = e-109
 Identities = 204/207 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcccacagctgtggtttcctgactccatggcttagactgaaccatcagagcagatgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcccacagctgtggtttcctgactccatggcttagactgaaccatcagagcagatgta 260

                                                                       
Query: 61  ctctggaaagggcgtggccaggtgaggactgtccttgaggaggaaatgacaattattaca 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctggaaagggcgtggccgggtgaggactgtccttgaggaggaaatgacaattattaca 320

                                                                       
Query: 121 tgggatagttttcttgaatagctctagggcactctctctttagggcacatacaggtgtgt 180
           ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tgggatagttttcctgaatagctctaaggcactctctctttagggcacatacaggtgtgt 380

                                      
Query: 181 gtgtgtgtgtgtgtgtgtgtgtgtgtg 207
           |||||||||||||||||||||||||||
Sbjct: 381 gtgtgtgtgtgtgtgtgtgtgtgtgtg 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)