TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCATAGCGACACACTATTGGCTTATTCAAACATTAACAGAAAGA
ACACAGGGCATCAGAACTTTGTTCCTGTGGGCTGGGGGCTTATCTTTGTT
CACATAGCAACCAGTTGATGTATGACTTTACCCTGCGCAATAGACAGAGG
GGAGGTTCTGGCCAGATGGTGTTGACTTAGATAATATAGCCCTGCTGGTC
CTTGCATACCTTTTTATCTTTACAGTCAAGATGTTCTTAGGAATGCCTTA
ACAACAGCCCTGCCCTGGCATGCCTGGGGGCTGTTCTGCTTTGTTCTCAG
CCCCAGGCCGGGGCAGTGGGCTCCTAAACAACTCACAAGTTACAATATTT
TATCTTTCTTCATTAGTAGTCAAATGGAAAAAAATATAAGTAAAAACTAA
AAATTGACTTTTTAAATTTTTCACTAAGAAGTTGAAAATACAAAGAGTCC
TGGGAAGGTAGTCTGTGATATAATGCAGTAAAGTAATTTTAGAACTGGGG
CAGTGTACAAGTTGGTGGGAAACTTTGCCAAAAAGAGAAAAGAAATATAA
CATTTCTGTGTTTGAGAAAGTTGAGAATATTACTCAGCTCCAGAACTGAA
GACAAACTTAAATCTGCATTGAAAACCTCAGCGTTTAAGTACAGAGAGAA
AGCTGGGAATTGGGGTGAATTGAAACACCCAGGN

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTTTAAAGAAGTTATTTATGGCCTTTTT
AAAGTCCTCTATCATCATCATGAGATGTTTCTTTAAATCAGAGTCTTGCT
TTAATGGTGTGTTGGGATATCCAGGGTTTGTTGTGGCGGGAGAACTGGGT
TCTGATACCAAGTTGTTTTCTTTTGCTTATGTTCTTGCCCTTCCCTCTCG
CCATCTGGATATCTCTGGTGTTAGCTGGTCTTGCTGTCTCTGACTGTGGC
TTGTCCCTCCTAAAAGCCTGTGTGTCAGTAATCCTGGAAGAACAGTTCTC
TCTGGAAGGAATTTGGGTGTGGAGAGCTGTGGCACAGGGTCAGCTCCTGA
GTGAAAATAGAAACCTGAAGGATCCTGTCCCCTTTGTTCCTGTGTCTTGA
TGACTCTGGGCTTATCCCTTTTGGGCCAGGAATTTGAGCAGAAGTGGTGG
TGTTGCCTGTGTGCACAGGTGTGCTAGCACTCCTGGGAAAGTGCTTTCTC
TTGCTGGTATTTGGGTATGGAGCACTGTGGCACAGGATCAGGTCCAGTAC
TTCTTTTCTCCTTTTCATCGTTCTTTTATCTTTCCCCTTTTCATTCCTTT
GCCTTCTCTCTTTTCTTTCTTTCTTCCTTCCTTTCTTCCTTCTTTCCTTT
CTTCCTTCCTTCCTTCCTTTCTATCCTTCCTTACTTCCT

Query= MSMg01no061_f19.b1 MSMg01no061_f19.b1 CHROMAT_FILE:
MSMg01no061_f19.b1 PHD_FILE: MSMg01no061_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:18 2005
         (684 letters)



>mm_chr11_27298386_27299471
          Length = 1086

 Score =  994 bits (514), Expect = 0.0
 Identities = 524/528 (99%), Gaps = 2/528 (0%)
 Strand = Plus / Minus

                                                                        
Query: 159  ggttctggccagatggtgttgacttagataatatagccctgctggtccttgcataccttt 218
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 ggttctggccagatggtgttgacttagataatatagccctgctggtccttgcataccttt 1027

                                                                        
Query: 219  ttatctttacagtcaagatgttcttaggaatgccttaacaacagccctgccctggcatgc 278
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1026 ttatctttacagtcaagatgttcttaggaatgccttaacaacagccctgacctggcatgc 967

                                                                        
Query: 279  ctgggggctgttctgctttgttctcagccccaggccggggcagtgggctcctaaacaact 338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  ctgggggctgttctgctttgttctcagccccaggccggggcagtgggctcctaaacaact 907

                                                                        
Query: 339  cacaagttacaatattttatctttcttcattagtagtcaaatgg--aaaaaaatataagt 396
            ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 906  cacaagttacaatattttatctttcttcattagtagtcaaatggaaaaaaaaatataagt 847

                                                                        
Query: 397  aaaaactaaaaattgactttttaaatttttcactaagaagttgaaaatacaaagagtcct 456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846  aaaaactaaaaattgactttttaaatttttcactaagaagttgaaaatacaaagagtcct 787

                                                                        
Query: 457  gggaaggtagtctgtgatataatgcagtaaagtaattttagaactggggcagtgtacaag 516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786  gggaaggtagtctgtgatataatgcagtaaagtaattttagaactggggcagtgtacaag 727

                                                                        
Query: 517  ttggtgggaaactttgccaaaaagagaaaagaaatataacatttctgtgtttgagaaagt 576
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 726  ttggtgggaaactttgccaaaaagagaaaagaaatatagcatttctgtgtttgagaaagt 667

                                                                        
Query: 577  tgagaatattactcagctccagaactgaagacaaacttaaatctgcattgaaaacctcag 636
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666  tgagaatattactcagctccagaactgaagacaaacttaaatctgcattgaaaacctcag 607

                                                            
Query: 637  cgtttaagtacagagagaaagctgggaattggggtgaattgaaacacc 684
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606  cgtttaagtacagagagaaagctgggaattggggtgaattgaaacacc 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1086
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1076
Effective search space:   725224
Effective search space used:   725224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)