Query= MSMg01no062_b22.b1 MSMg01no062_b22.b1 CHROMAT_FILE:
MSMg01no062_b22.b1 PHD_FILE: MSMg01no062_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:22 2005
(841 letters)
>mm_chr11_10448159_10449400
Length = 1242
Score = 1450 bits (750), Expect = 0.0
Identities = 810/832 (97%), Gaps = 8/832 (0%)
Strand = Plus / Plus
Query: 16 ggaattcttataggatcatcatcaa---ttaaagtcatctatttatctatatagcatcac 72
|||||||||||||||||||||| || |||| |||||||||||||||||||||||| ||
Sbjct: 213 ggaattcttataggatcatcataaagacttaa-gtcatctatttatctatatagcattac 271
Query: 73 tataagcacaatacatcttcgcgcatctgcagagatctactccaaaggagtgtgctatta 132
|||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 272 tataag-acaatacatcttcgtggatctgcagagatctactccaaaggagtgtgctatta 330
Query: 133 gtgattattat--gtgttgaatattaacagtaaagcatatttatagcacgagtctttcct 190
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gtgattattatatgtgttgaatattaacagtaaagcatatttatagcacgagtctttcct 390
Query: 191 aacgaatcccttatagccttgcttaataagggagcacctcacagcttatataataatcca 250
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aatgaatcccttatagccttgcttaataagggagcacctcacagcttatataataatcca 450
Query: 251 aagcagaccatttcagggtgatcacctggtagttattagcttgtcccattatgtctcctg 310
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aagcagaccatttcaggatgatcacctggtagttattagcttgtcccattatgtctcctg 510
Query: 311 acatgtaaacatgctcaataaaggattaggttctatgtggtagaggcctctcacatgtgg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 acatgtaaacatgctcaataaaggattaggttctatgtggtagaggcctctcacatgtgg 570
Query: 371 aggaactatctcaggagatacttagacctacgtgaggcatactgtacattcagaacccag 430
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 571 aggaactatctcaggagatacttagacctacctgagacatactgtacattcagaacccag 630
Query: 431 gaaagagatgctgagaggaacataaactcaagccacctactatgggagaggcaaacttgt 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gaaagagatgctgagaggaacataaactcaagccacctactatgggagaggcaaacttgt 690
Query: 491 tagcttagactcagtgtgctgtcccacctggacaatcaatttgagctttagaggtaactc 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tagcttagactcagtgtgctgtcccacctggacaatcaatttgagctttagaggtaactc 750
Query: 551 tgttgattaagtcaaggagagttcccttactagtactcagcgatctcctgccacaggaag 610
||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||
Sbjct: 751 tgttgattaagtcaaggagagttccctcactagtactcagtgatctcctgcctcaggaag 810
Query: 611 cagattcaagaacacagattttgttggtttttccaataactttacctgtcctcttattat 670
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 cagattcaagaacacaaattttgttggtttttccaataactttacctgtcctcttattat 870
Query: 671 ttacctaactattccttcattatatcacaaaagctcatacttttattttatttcaacaaa 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 ttacctaactattccttcattatatcacaaaagctcatacttttattttatttcaacaaa 930
Query: 731 agaataatgttgtatttgtgtgttttaagtgacatctttttctttg-gtaagaattaact 789
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 931 agaataatgttgtatttgtgtgttttaagtgacatctttttttttttgtaagaattaact 990
Query: 790 tctttttattacatattttctttatttacatttcaaatgttatcccctttcc 841
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 tctttttattacatattttctttatttacatttcaaatgttatcccctttcc 1042
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 841
Length of database: 1242
Length adjustment: 10
Effective length of query: 831
Effective length of database: 1232
Effective search space: 1023792
Effective search space used: 1023792
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_b22.g1 MSMg01no062_b22.g1 CHROMAT_FILE:
MSMg01no062_b22.g1 PHD_FILE: MSMg01no062_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:23 2005
(796 letters)
>mm_chr11_10518159_10519354
Length = 1196
Score = 1402 bits (725), Expect = 0.0
Identities = 731/733 (99%)
Strand = Plus / Minus
Query: 1 gaacaagctgttagaaattggagaaacagtcaaaactttgcacaaccaagcaaatgatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gaacaagctgttagaaattggagaaacagtcaaaactttgcacaaccaagcaaatgatga 674
Query: 61 acctagaaaacatcaattaatacaaaatgcaatgtaagatgtattctcactctctgtccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 acctagaaaacatcaattaatacaaaatgcaatgtaagatgtattctcactctctgtccc 614
Query: 121 ttggcacatctagtttcaaacactgataccaacaacagcctctgctctggaatggggccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttggcacatctagtttcaaacactgataccaacaacagcctctgctctggaatggggccc 554
Query: 181 ttgtcttttcctgagaaaaagtagttgtggtcctactcaaagatgtttctatatgtcaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttgtcttttcctgagaaaaagtagttgtggtcctactcaaagatgtttctatatgtcaat 494
Query: 241 tctaatacatatgtgggattcctaaagaatgaacatgaagcgattttctctgtttggtta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tctaatacatatgtgggattcctaaagaatgaacatgaagcgattttctctgtttggtta 434
Query: 301 tcttagaagttacactggtctggtaaactgggtattattcaaaagcagtgcaaggcacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tcttagaagttacactggtctggtaaactgggtattattcaaaagcagtgcaaggcacaa 374
Query: 361 gaaaaactgaaggtgtttaggccagaatattacagataaaaataaagtgccctgtgtaaa 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 373 gaaaaactgaaggtgtttaggccagaatattatagataaaaataaagtgccctgtgtaaa 314
Query: 421 tccacagaagaagatcggaggggagaaaatcagggtattcaatagcatctatgtataagg 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tccacagaagaagatctgaggggagaaaatcagggtattcaatagcatctatgtataagg 254
Query: 481 gagaattaagaaattcattaccagagcaagacaaaacacacccccaagcaaagatgtaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gagaattaagaaattcattaccagagcaagacaaaacacacccccaagcaaagatgtaag 194
Query: 541 gtgatgctaattgtcccttatgtctggtctacaggtcctgtgtaggcttatggaatttat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gtgatgctaattgtcccttatgtctggtctacaggtcctgtgtaggcttatggaatttat 134
Query: 601 gccatgaagaggaagctagtatatagtatctgcacagactaatagtgtttgcccttcctt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gccatgaagaggaagctagtatatagtatctgcacagactaatagtgtttgcccttcctt 74
Query: 661 tctcttgctcattctctcacttcctctctgcattaaaggaaatctctattaaagaaacaa 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 tctcttgctcattctctcacttcctctctgcattaaaggaaatctctattaaagaaacaa 14
Query: 721 acaagggcctaat 733
|||||||||||||
Sbjct: 13 acaagggcctaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 796
Length of database: 1196
Length adjustment: 10
Effective length of query: 786
Effective length of database: 1186
Effective search space: 932196
Effective search space used: 932196
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
