BAC Information

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BAC

Clone NameMSMg01-062J18
Chromosome11 (Build37)
Map Location 43,771,573 - 43,771,934
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl, Fabp6, LOC620562, 4631424J17Rik, Ttc1, Adra1b
Downstream geneIl12b, Ublcp1, 3732413I11Rik, Ebf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062J18.T7 (MSMg01no062_j18.b1)MSMg01-062J18.TJ (MSMg01no062_j18.g1)
ACCAG288544AG288545
length1,1821,193
length of high quality
(start - end)
548 (87 - 634)362 (408 - 769)
definitionCHROMAT_FILE: MSMg01no062_j18.b1 PHD_FILE: MSMg01no062_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:23 2005CHROMAT_FILE: MSMg01no062_j18.g1 PHD_FILE: MSMg01no062_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGTTTTTTTNNNGCATTGGGCGCTATGACTCCTATGGGAGAGGATCCGC
GGAATTCCTTCTTTATGTCCTCCCTATTATCCTGAGATATGCTTTTAAAT
CCAGGTCTACCTTTTCAGGTGTGTTAGGCCCCCCTGGATTGGGCGAAGTG
GGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGG
ATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTA
TAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTTACCCTCTA
TCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAGTGGTCAGAG
CAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGAAAGGTGTACAGTTATCT
GGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGGATCTT
TCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTCTGGAGT
CGAAGATGTCGCCGCCTCAGAAGCTCTGTGGCTCTTGTCCGGAAGGAGGC
CGGCCGTCTGGAGCTGAGGTTGGCGCAGCCTCAGAAGCTCTGTGGCTCTT
GCTGGGAAGGTGGCTGGTTGTCTGGAGCTGAAGATGGCGCCGCCCCAGAA
TCTCTGCGACTCTCTCGCCCGTCCCAGAAACGGCTGGCACTCTGTATTCC
ACACTGTCACCCGTGCAGCCTGTCCTCCGCGTAGTCCCGGAGCCTATAAG
GCTCCTGTCGTTGTCTGTGTCTCAAACCTTTTCAGCCGTTTAGAACTCCA
TGCTTCTCCCAGGAAGGTGGCCGGTTGTTTGTAGCTAATTATGGTGTCGC
CCATAATCTCTGGTTACTTTCGCCGTTCCATATATGTCTGTTCATTCTGT
TTTCACTTGTTTTACCCTTGTATTCTGCTCTTCTCGTATTTTCGTTATTT
AAATTTTTTCTCTCTTTCGTTTTTTGTCTCTTTTTTTTTCTTTTTTGTTA
TATTCTCTTTGTTTTCTTCTTATAATGTTTTTTTGTTTTTTTTTATTCTT
ATAATTTTTTCTTCTTTTTATTTTTTTTGTCTTTTTTCTCTATCTTTTAT
ATTTTTTGTTATTTCTTTTATTTCTCTTTTCTCTTTTTTCTTTCTTTTTC
TTCCTTTTTTTCATTCTATTTATTTCATTTTT
CGTTTTTTTTTTTNACGATGTGAGNCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCCTAAAACCCCCCTGAGNAGGAAA
GGGAAGAAAATGGGCCCTTTTAAACCTCCGAGGCCCCGGNCATGCACCCG
GGGTCTAAAAGAGCAGCCACTGCTCTCTACCTTAGCCTGTCTAGACCATA
CCTGTTTTTTCATGGAAGCCAGGATATGCTTTTAAAAATAAACAACTCTT
TTGAATATTAAACACAGGCAAAAGTTGAAAGTACTCTCTGGTCAAAAATC
AAACCTCAACCAAAACCCTTGCTATTTTATATAGAGATATGAAGCCACCT
ACATAACTTTCCTAATGATTTGAGATGAGTCCTTTCTCAGGTATCTGCCT
GTTTATGGAGATGAGGGGGACATATGGGAACCAAAGGTAGCATGAGGTGA
CTGAGTTGGGGTGCTCACTGTCATGGTTGAGCCCAACCTAGCATAACAAG
GGGATTTGGCACCAGTCAAGTCTTTGCAAGGTACTTCCCTGGACTGTGAC
CCTTGCCTAGAGTCTGGGAGTAGGCAGGGAATGAGAAGGCCATCAAATCT
GCAAATCAAGGTTGGGAGAAGAACCCAGAAGGTACAGGTAGTGACAGGAA
GGCCACTGAAGAACAGATCAAGGTGGTGTGATTCTGTTCTGACTTCCCTG
CCTGGGAGGGAGTGGAACACAGAGTGTCCTGTTCTTATAGCCACACTGTT
TGCTTCCAGGTCACACCCTCTGGAAGTCATTACTCAGTCCTGCCCCACTG
ACCTCAGGGGAAAGTGTGAGAAGACAGGAACAGCCCGTTTTTAATTCTTA
AATAAAGCCCAGATAACAGTTGAACCAGTGTCCAGCTTTGGGGCTTAAAG
TCCCTTGACTGTCTCCGAGCCCCCAAGCAATAAGGGACTATTTGAAGTAT
ACGAAAACACGGTATCCACCCGCTTCGGCTGTGCAGGGTGGGCCCCCTAC
TGCCTTAGGAGCCTAACGGTGTGAGTAGGCCCTGAATTTTCTGTCCCTTG
GGGAAAATTGTTGGGTGGTAATTCTATAATAAACTGGGGGTTTGGGCTCC
TTTTAGTACCTTAATTCTCTTTTTCTCTCTGGGTGTTAAACTCTANCTCT
CTAGACCCCCTTGGTGTGGCTTCCATCCTCTCTTTGTGGTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_j18.g1 MSMg01no062_j18.g1 CHROMAT_FILE:
MSMg01no062_j18.g1 PHD_FILE: MSMg01no062_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:23 2005
         (362 letters)



>mm_chr11_43771373_43772134
          Length = 762

 Score =  677 bits (350), Expect = 0.0
 Identities = 359/362 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagatgagggggacatatgggaaccaaaggtagcatgaggtgactgagttggggtgctca 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagatgtgggggacatatgggaaccaaaggtagcatgaggtgactgagttggggtgctca 260

                                                                       
Query: 61  ctgtcatggttgagcccaacctagcataacaaggggatttggcaccagtcaagtctttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtcatggttgagcccaacctagcataacaaggggatttggcaccagtcaagtctttgc 320

                                                                       
Query: 121 aaggtacttccctggactgtgacccttgcctagagtctgggagtaggcagggaatgagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aaggtacttccctggactgtgacccttgcctagagtctgggagtaggcagggagtgagaa 380

                                                                       
Query: 181 ggccatcaaatctgcaaatcaaggttgggagaagaacccagaaggtacaggtagtgacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccatcaaatctgcaaatcaaggttgggagaagaacccagaaggtacaggtagtgacag 440

                                                                       
Query: 241 gaaggccactgaagaacagatcaaggtggtgtgattctgttctgacttccctgcctggga 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagaccactgaagaacagatcaaggtggtgtgattctgttctgacttccctgcctggga 500

                                                                       
Query: 301 gggagtggaacacagagtgtcctgttcttatagccacactgtttgcttccaggtcacacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggagtggaacacagagtgtcctgttcttatagccacactgtttgcttccaggtcacacc 560

             
Query: 361 ct 362
           ||
Sbjct: 561 ct 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)