BAC Information

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BAC

Clone NameMSMg01-062P12
Chromosome11 (Build37)
Map Location 24,337,205 - 24,337,881
singlet/doubletsinglet
Overlap genenone
Upstream geneAhsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
Downstream geneLOC100042282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062P12.T7 (MSMg01no062_p12.b1)MSMg01-062P12.TJ (MSMg01no062_p12.g1)
ACCAG288819AG288820
length1,1731,148
length of high quality
(start - end)		682 (86 - 767)677 (88 - 764)
definitionCHROMAT_FILE: MSMg01no062_p12.b1 PHD_FILE: MSMg01no062_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:07 2005CHROMAT_FILE: MSMg01no062_p12.g1 PHD_FILE: MSMg01no062_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTTTTTNNNNNTACAGTGCGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGTGAGAAACCATGCCCTTTAAAAGTATGATGGAGGGG
GCTGGAGGAATGGCTCAGCGTTTAAGAGCACTGACTGCTCTCCCAGAAGT
CCTGAGTTCAATTCCCAGCAACTACTTGGCGACTCACAACCATCTGTAAT
GGGACCCGATGTCATCTTCTGGTGTGTCTGAAGACAGCTACAGTGTATGT
GTAATATATACATAAATAAATATTTTTAAAAAATGTAAGATGGAGGAGTG
AGGAATGACCTCTGCCCCCTTCAAATGCAGGCATGGACCTGAACATCTGC
CTGAACATGGCAGTACATGTCTTAATTCCAGTACACAGGAAGTGAGGGCA
GAATGACCAGGAGTCCAAAGGTAGCTGTAACTAGTAAGCTAAGAGCTGAG
CTTTCTCTCAAGTGTTCACTGGAGTATGCTTCCTGCATGTTATGCTTGCC
TTCTCCTGTTGTGGGCTGTCCAGTTGCATAGGTTTCCTCCTCGCTATGGT
CCATCCCATTAGCACACAGCATCCATCACAGTCCTCCCAACATCCACCAC
AGTCCTCCCAACATTCACCACAGTCCTCCCAACATCCACCACAGTCCTCA
CAACACACACCACAGTCCTCCCAACATCTACCACAGTCCTTCCAACATCC
ACCACAGTCCTCACAACACACACCACAGTCCTCCCAACATCTACCACAGT
CCTCCCAACATCCACCACAGTCCTCACAACACACACCACAGTCCTCCCCA
CATCCACCACAGTCCTCCCAACATCCACCACAGTCCTCCCAAAATCAACC
ACAGTTCCTCCAACATCTATCACAGTCCCTCCCAACATTCACCACAGTTC
CTCCCAACATCTACCACAGTTCCTCCCAACATCCACCAAAGTCCTCCCAA
CACCCACCACAGTCCTCCCAAAACCCATCAAAGTCCTCCCAAAATTAACC
AAAGTCCTTCCCAAAATCCACCAAAAACCTCTCCAAATTAAACCAAAAGT
CCTCCCAAAATTCCCACAACAATTCCTTCCCAATATCTAATCACGTTCTT
TCCCATAATTCAATTCAAATGTTCCTCCAAATACCTCCCCTAATTTTTCT
CCAAAACCCTCCCTAAAGTTCTT

CGTTTAATTTNNNNAAAGAAGGNAGGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCATTAACTTACGCAAAGCCAAATG
TTTTGTTTTGTTTTGTTTTTTTAATTTTTTTCCAATCACTAATCATTGGG
AAATCCTGTATGTGGGTAGGTAAGGGGGAATTCTAGAAATAGTTTTGCCA
TCTATCAGCACAGTAACTGAGTGTTGTCGTCCAAAGCCTAGAACCCAATG
CAAAGGGCATTGAGGGTTTTGGCGAAACCTTGAGCTATTTGGGGGACTGT
AGCAAAACACCTAGATCCTACTGGGAGAGTTTAAAGGGAGATTCTTAATT
GAATGGGGGAGAAGATAGGTCCATGGAGCCCTTAATAGACTAAAAGCTCC
TTGGAATACCTCTGGCTTGTCACCTGAGGGGGGAAGGCTCAACAGAACAA
TGAGTAGATTCTAACAGTGATTTTGATGAAAAACTAATTAGGAACATAAC
AAGGAGATTATTAATTCCTGCCAGAATCAAAATTACAGACCCTACCATGT
TGGAAACATGAGCTCTAGAAAAGAACAACTCTCAGGCCATGTTTTAAAGA
CTGCTGCCTGGAAGGGAGGATGGGCAAGGAAAGTGTAGAGGGAATCAGAG
ATGGGTGCCTAGGGGCAAATGCTCAGGGACTAGAGACTTTGCAACAGTCA
AAGGAATGAGAGTGCAGTCTGTGTGTGCTACCCTGGGAGATCAGGAGATA
GTACAGACGCTGGGTTATATCCTTGCACAGCTTCTAAAGTCAGACAAGAT
ATTGAGAAGAAATGCTATGGCCAGAATTGTTGCCAAGCTTGAGGATGGCC
TAAAATACCTCCATAGAACTCATTTGTTAGAGGGGTAGAAAACCATTTTT
GTAAGTGGTCTTCCGATCTGTACACCATACCCTGTGTTAGAAGGTTAGCC
GAAGTGATCCTTACTGAACAGCGCTAATAATATTGGCCCCCTTTGGTTTT
TGTTTTTTTTCTAAAAAATTTCCCCTTGTTTGTTCCGTTAATTTCACTTT
GTATATTTCTGTCTTCCTTCTCAATCTTAACAATCTGTGTTTCCCCTTTT
ATCTCCTCTTTGATTGCTATTTCAATGGTCTTCTCCTTCTTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_p12.g1 MSMg01no062_p12.g1 CHROMAT_FILE:
MSMg01no062_p12.g1 PHD_FILE: MSMg01no062_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:07 2005
         (677 letters)



>mm_chr11_24336973_24338049
          Length = 1077

 Score = 1286 bits (665), Expect = 0.0
 Identities = 674/677 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaaagccaaatgttttgttttgttttgtttttttaatttttttccaatcactaatcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 909 gcaaagccaaatgttttgttttgttttgtttttttaatttttttaaaatcactaatcatt 850

                                                                       
Query: 61  gggaaatcctgtatgtgggtaggtaagggggaattctagaaatagttttgccatctatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 gggaaatcctgtatgtgggtaggtaagggggaattctagaaatagttttgccatctatca 790

                                                                       
Query: 121 gcacagtaactgagtgttgtcgtccaaagcctagaacccaatgcaaagggcattgagggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gcacagtaactgagtgttgtcgtccaaagcctagaacccaatgcaaagggcattgagggt 730

                                                                       
Query: 181 tttggcgaaaccttgagctatttgggggactgtagcaaaacacctagatcctactgggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tttggcgaaaccttgagctatttgggggactgtagcaaaacacctagatcctactgggag 670

                                                                       
Query: 241 agtttaaagggagattcttaattgaatgggggagaagataggtccatggagcccttaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 agtttaaagggagattcttaattgaatgggggagaagataggtccatggagcccttaata 610

                                                                       
Query: 301 gactaaaagctccttggaatacctctggcttgtcacctgaggggggaaggctcaacagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gactaaaagctccttggaatacctctggcttgtcacctgaggggggaaggctcaacagaa 550

                                                                       
Query: 361 caatgagtagattctaacagtgattttgatgaaaaactaattaggaacataacaaggaga 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 taatgagtagattctaacagtgattttgatgaaaaactaattaggaacataacaaggaga 490

                                                                       
Query: 421 ttattaattcctgccagaatcaaaattacagaccctaccatgttggaaacatgagctcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttattaattcctgccagaatcaaaattacagaccctaccatgttggaaacatgagctcta 430

                                                                       
Query: 481 gaaaagaacaactctcaggccatgttttaaagactgctgcctggaagggaggatgggcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaaaagaacaactctcaggccatgttttaaagactgctgcctggaagggaggatgggcaa 370

                                                                       
Query: 541 ggaaagtgtagagggaatcagagatgggtgcctaggggcaaatgctcagggactagagac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggaaagtgtagagggaatcagagatgggtgcctaggggcaaatgctcagggactagagac 310

                                                                       
Query: 601 tttgcaacagtcaaaggaatgagagtgcagtctgtgtgtgctaccctgggagatcaggag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tttgcaacagtcaaaggaatgagagtgcagtctgtgtgtgctaccctgggagatcaggag 250

                            
Query: 661 atagtacagacgctggg 677
           |||||||||||||||||
Sbjct: 249 atagtacagacgctggg 233


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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