Query= MSMg01no063_a12.b1 MSMg01no063_a12.b1 CHROMAT_FILE:
MSMg01no063_a12.b1 PHD_FILE: MSMg01no063_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:14 2005
(569 letters)
>mm_chr11_84850613_84851581
Length = 969
Score = 1093 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 1 ggctatgtaaaaagacccttgcttaccccaaccaaaagaccattttttaattattatact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggctatgtaaaaagacccttgcttaccccaaccaaaagaccattttttaattattatact 260
Query: 61 gagtgtatggtgattatctgttcaccacattaatacaatacctttgaaggcccaaaggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtgtatggtgattatctgttcaccacattaatacaatacctttgaaggcccaaaggag 320
Query: 121 aggttcccctgaagctggagctataaacatgtggttggttgtttgggatcaaacccaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggttcccctgaagctggagctataaacatgtggttggttgtttgggatcaaacccaggt 380
Query: 181 cctctaaaagaacaagaaactggtgttcttgaccagtaagctatcactccaacccctatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctctaaaagaacaagaaactggtgttcttgaccagtaagctatcactccaacccctatg 440
Query: 241 tgtacatgggtattttgccttcataaatgtaccacatgtgtgcctggtgcctacagaggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtacatgggtattttgccttcataaatgtaccacatgtgtgcctggtgcctacagaggc 500
Query: 301 cagaagaggttgtcagatcccttgaaactgaagtgtcagacagatgtaagctaccgtgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagaagaggttgtcagatcccttgaaactgaagtgtcagacagatgtaagctaccgtgga 560
Query: 361 ggagctaggaagcaaactcaagttcttttgcaagatcagccactgagatgtttctagcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggagctaggaagcaaactcaagttcttttgcaagatcagccactgagatgtttctagcct 620
Query: 421 tcaacctacagcttttaaagacagtgttgctttatatagtggtctgccctgaacctttga 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaacctacagctcttaaagacagtgttgctttatatagtggtctgccctgaacctttga 680
Query: 481 cctttaagtattgattgatattatagtcatgtgtcaccacgataagctctgatactaatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctttaagtattgattgatattatagtcatgtgtcaccacgataagctctgatactaatt 740
Query: 541 ttaaaatgtttaacaaattcattccctat 569
|||||||||||||||||||||||||||||
Sbjct: 741 ttaaaatgtttaacaaattcattccctat 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_a12.g1 MSMg01no063_a12.g1 CHROMAT_FILE:
MSMg01no063_a12.g1 PHD_FILE: MSMg01no063_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:14 2005
(553 letters)
>mm_chr11_85004346_85005300
Length = 955
Score = 1046 bits (541), Expect = 0.0
Identities = 551/555 (99%), Gaps = 2/555 (0%)
Strand = Plus / Minus
Query: 1 atactgtgaaatcaaaccatgttgtttttagggctggcatttgcattgaaacactggtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 atactgtgaaatcaaaccatgttgtttttagggctggcatttgcattgaaacactggtcc 696
Query: 61 agtccacccaagaccctatttcgggtagtcctgtattgcagttcctgtagaataagcata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 agtccacccaagaccctatttcgggtagtcctgtattgcagttcctgtagaataagcata 636
Query: 121 tattgagttatatcagcatgtgccgcgtgtataagtagtcccacattctcaccccagtag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tattgagttatatcagcatgtgccgcgtgtataagtagtcccacattctcaccccagtag 576
Query: 181 aacaacaggaaaccgttttttttttctttttaaaaaataattcgtttttcagaaagtctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aacaacaggaaaccgttttttttttctttttaaaaaataattcgtttttcagaaagtctg 516
Query: 241 aaag--aaaaaaaaaaagaacccctaaataaaactatttaagagtttaaaagagttgcat 298
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aaagaaaaaaaaaaaaagaacccctaaataaaactatttaagagtttaaaagagttgcat 456
Query: 299 tcttattatgtaaggatgatttcaaaaactttttaacatatagttaattcttccatgtgg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tcttattatgtaaggatgatttcaaaaactttttaacatatagttaattcttccatgtgg 396
Query: 359 aggtattcaatactgtattgtaaggaaatcttatggaaaactctttatatgcagtataga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aggtattcaatactgtattgtaaggaaatcttatggaaaactctttatatgcagtataga 336
Query: 419 aaagtaacatagatactagtaagaggggaggggcaccctgacctagatttggccgtcttt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aaagtaacatagatactagtaagaggggaggggcaccctgacctagatttggccgtcttt 276
Query: 479 tccaaatcagggcattcagccattccagaactgtttcagtgacggactgtccggttcgtc 538
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 275 tccaaatcagggcattcagccattccagaactgtctcagtgacggactgtcaggttcgtc 216
Query: 539 tgactggaccaacgt 553
|||||||||||||||
Sbjct: 215 tgactggaccaacgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 955
Length adjustment: 10
Effective length of query: 543
Effective length of database: 945
Effective search space: 513135
Effective search space used: 513135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
