BAC Information

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BAC

Clone NameMSMg01-063G01
Chromosome11 (Build37)
Map Location 115,557,001 - 115,557,288
singlet/doubletsinglet
Overlap geneGrb2
Upstream geneTtyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19
Downstream geneLOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063G01.T7 (MSMg01no063_g01.b1)MSMg01-063G01.TJ (MSMg01no063_g01.g1)
ACCAG289132AG289133
length797788
length of high quality
(start - end)		293 (120 - 412)240 (131 - 370)
definitionCHROMAT_FILE: MSMg01no063_g01.b1 PHD_FILE: MSMg01no063_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:42 2005CHROMAT_FILE: MSMg01no063_g01.g1 PHD_FILE: MSMg01no063_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCC
CCCCCNNNCCCCCTAACANCAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGATAGCCGCTTACTTGCC
TTCATTGGTTCTAGAAGGGAACCAGCATTCACTCACTACCTTTAGCCATC
TTCCTGAACTGCTTGAGAAATAGGTTTTGGGTTTACTTTCTGCTTTTTGA
GCATCTGCCCGTCTCTGCTGCTTGTATGGCTCAGGGTTACATTTTCTGAA
CATGTCTTGAGCCACACTCTGGTTGCCTTTGCTGTTGGAGAAGAAACAAA
CTACCCTCTCTATTCAGCAGCCCTGCAAGAAAAACACATTACTGTACTAA
GCAGCCCAAGGCTGTACAAGTTACAAAGATTGATTATAGAGAAAAGGCCC
CTTTACAACCCTCTTCACTTAAGATTGACTAATTTGGCATTTATCCCTCA
TTTGTAGACCAGCGGCTGTGTTACCCGCCCCTCTCCTCCCGCCTTCTTTA
CCATTGGCCCTATTACCCCCATCAGTTTTATTTTCTCTTGCTACACTCCC
ACCGATTAACATACTACATCTACCTTTCCACCACACCATAACAAAATACA
TAACCCTGCCCTCCTCCCCGCTCACCCTCCCCCCCCCCCCTCTTCTCCCC
CCCCCCCCCCCATTAACCCAGCGGCACAGATTACGAAGCCCCCCTCGGTA
CTAAGCACCGCAACTTCTGTCCTGAAAACACCCCCCCAGCAGCAGAG

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCTTTNTTTTC
CCCCTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCTAAGGTTATGT
AGAAAGATCCTGTGTCATTTTTGTGTCTTTCCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCGAC
CTTCCTATCTATCTATCTATCTATCTATTTATCTATCTATCTATCTATCT
ATCTATCTATCTATTTATCTTCCCCCCCCCCCGCCCGTATTTCTCGAATG
TAATCACCTTGGATGCCCTGCACCCATAAAAAAAAAACTAATCTGCTTTT
GTTATTCAAACATCTCCTGCTTGCCCTCTGACCATCTTATCGCTGCTAAA
TACTCATTTCTGTGTTTACTTTGCCCAACCATTTGTTCTTTTTTACTTAC
CGCTATTACGTGAGTTTTATTTCGCGTTCTCACTTATCTTTCTTCCTCCC
TCTTATAACATTTTATTTATTCACTATATCCTCTCCCACATACCCCTATT
AACCCCCTCTTTCCTCACCTGTTTTCTTTCCTCTTCACAGCTTATATTAC
CCCCGTTTATACCCTTTATCTTCTCTACCCCTCTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_g01.b1 MSMg01no063_g01.b1 CHROMAT_FILE:
MSMg01no063_g01.b1 PHD_FILE: MSMg01no063_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:42 2005
         (293 letters)



>mm_chr11_115556797_115557488
          Length = 692

 Score =  513 bits (265), Expect = e-150
 Identities = 283/289 (97%), Gaps = 1/289 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgatagccgcttacttgccttcattggttctagaagggaaccagcattcact 64
           ||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gaattctctgagagttgcttacttgccttcattggttctagaagggaaccagcattcact 433

                                                                       
Query: 65  cactacctttagccatcttcctgaactgcttgagaaataggttttgggtttactttctgc 124
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cactacctttag-tatcttcctgaactgcttgagaaataggttttgggtttactttctgc 374

                                                                       
Query: 125 tttttgagcatctgcccgtctctgctgcttgtatggctcagggttacattttctgaacat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tttttgagcatctgcccgtctctgctgcttgtatggctcagggttacattttctgaacat 314

                                                                       
Query: 185 gtcttgagccacactctggttgcctttgctgttggagaagaaacaaactaccctctctat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 313 gtcttgagccacactctggttgcctttgctgttggagaagaaacaaactactctctctat 254

                                                            
Query: 245 tcagcagccctgcaagaaaaacacattactgtactaagcagcccaaggc 293
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tcagcagccctgcaagaaaaacacattactgtactaagcagcccaaggc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 692
Length adjustment: 9
Effective length of query: 284
Effective length of database: 683
Effective search space:   193972
Effective search space used:   193972
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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