BAC Information

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BAC

Clone NameMSMg01-063G14
Chromosome11 (Build37)
Map Location 39,833,508 - 39,833,723
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063G14.T7 (MSMg01no063_g14.b1)MSMg01-063G14.TJ (MSMg01no063_g14.g1)
ACCAG289158AG289159
length1,426847
length of high quality
(start - end)
---220 (157 - 376)
definitionCHROMAT_FILE: MSMg01no063_g14.b1 PHD_FILE: MSMg01no063_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:45 2005CHROMAT_FILE: MSMg01no063_g14.g1 PHD_FILE: MSMg01no063_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATAAAANNAAAAAATATTTTNNNTTTTTTNTATTTAAATATTATTTNNN
TTTTTATATTAATTTTTNNTAAAATATANTATGATTTTNNTTTTTTATAT
AATATGGAAGGTCCGGGTAGAATAGCGGAACGATTCATATTAGCGGAAGG
AGTTATACCCGCTGATTAATATGTTATAACGTCATCATCGCCATGCTTGA
ATGCCATGCGGATTATGACGCGCGCCTGCAGTCCCCGACCGAGGATACTG
TGTAGACAACTACAAACTAATACACTACAACCTTCACCACCTCGAACTTC
GATCTTGCATGACTCGAGGCCGTGTCGCATCGAGCGGCAGGGGCCCTCGC
TATCGCGGCCCTCGGGCGGAGCGGGGGCCGAGCTGGCCCCGAGGTGGCTC
CTCCGAATCTACACGACGAACGCTTCGACCGCGTATACCTTCCGCCCGCA
CGCAACCGATTACCAACGCCGCGCGGCGCGCAACTATCTCGCTCATCTCC
TCTTCTCACCCTCCCCATAGCCCTCCTGCGTACTTATTATACGCTTGTGC
TCTTCGCCGCGCCCCTGTTCTCACCTACAAACACCGCGATCGCCGTAGGC
GCCATCCCCAGCGCCANGCGCAAGCGTCAGCGCGTTGTCCGCGACGCAAC
ACGATACGGTAGACGNTATCACACATCTGTCTGATGAGTACGCGACGTGC
CAGCTCACTATTACGCAGACTCACGCTCGCTACGCTCCGTTTCAGCGTTA
TGATTAGCATCTACGCCGACTACCCGCCGGCATGAGCATACAAATATTCA
ATCATACTATCGACGATTGACCGCACACAGAAGCTGAGCCTGCGCTTGCG
AGCGCTACGTCGACCATTGTGGTGTGTGTGCTGCCTACGACGATATAGAT
GATTGCTACCGTAACCGCCCGGCATATAGAGGAACAACAAACGAGATACA
AAGTGCTGTATGCTGTCTAGCAGACGGATAGACTATCACGCTGTACGAGT
ACGAATGTGGCCCACGCGGCGACGGACACGCAATCTATGCACGCACCATA
TACGTCTTATACGACTATCATCATATATGCTGAAGACACTATATTGTTGT
GTCGCCTTNAGCCAGCTGTCGATTATGTCTCATACGCGCAAGGGTTGTGT
CACACCCGCCAGATCGCGCGACAGGATATACGCCGACATACACATGTCAT
ACGCCCGACGCGCAGAGACGTGACACTCNATACCACCATTATCCGCACGA
CGCAAGACGATAGACATGAGCTAGTCTGTATTACGGANCACACGTATGCG
TCGTACGGTGCNCCGCAGACATGGTGACGGTGAGTCGCGTGTGNCCGATG
TCACCGTATCACACCTCTCCNATTCACTAGCTATAATCCACGACTCTATT
AGGAGACGCCGACGCATCATCGCACG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNCC
CCNNNNNNNNNNNNNNCCATAAATNANTTTACTATGACAGGTXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATCTTGAGCCAGCATTGTGGAAACAATTTTTCAGTCTCATTTAC
ATTGCCATGGCATCTTTAACAGTACAGGTGGTATACTGGATCACAGCTGA
CATGTAAGACTTTATAAGTACTATTGCTTTGTATTCTCGAGCACTTGCCT
GAAGATTGACACGTAAAACTATGCATCACATTTGTCTCCTGTAGCCAAAA
AATGTCTTTCTTCCATCACTTATTCTTCTCCTAATGAACAACCTTTTCTA
TTCTAAACCCCAAGTTTCCCCCCCCATATTTCCCCCCCCCAAAAACCCCC
CCTTGGACAAAAGGCCCTTTTCTTTGGGACAAAGAAAAACTCTTTAATAA
AAGGAAATCATTTTTTAAAAAAACCCCCTGCGGGGTCTTTGCACCCACAC
CCTTTGTTACACAACCGTTAACTCCTCCTTACACCACAACCTCTTTTTAC
GAAACACACTATCAATATACTATTATACCTTAACCATTACCCCCGATCTT
TTTTCTTCCTTCCCTTCTCTTTTCTTCCTTGTTCCTCCTTTTTCTCTTTC
CTCCCTCTCCGTCTTTTATATTCTCCCACTATATTTTATTTACACTTCCT
TTCCTCCTACTTCTCTTCTACATAATAAAAACCCAGCCTGTTACATTACC
CCCCTAAAGATCTATTATCTCTCCATCCCCTCCCATATTAATATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_g14.g1 MSMg01no063_g14.g1 CHROMAT_FILE:
MSMg01no063_g14.g1 PHD_FILE: MSMg01no063_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:45 2005
         (220 letters)



>mm_chr11_39833308_39833925
          Length = 618

 Score =  360 bits (186), Expect = e-104
 Identities = 210/218 (96%), Gaps = 2/218 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttgagccagcattgtggaaacaatttttcagtctcatttacattgccatggcatctt 60
           ||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 201 atcttgagccagcgttgtggaaacaatttttcagtctcatttacattggcatgacatctt 260

                                                                       
Query: 61  taacagtacaggtggtatactggatcacagctgacatgtaagactttataagtactattg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 taacagtacaggtggtatactggatcacagctgacatgtaagactttataagtactatcg 320

                                                                       
Query: 121 ctttgtattctcgagcacttgcctgaagattgacacgtaaaactatgcatcacatttgtc 180
           |||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 321 ctttgtattctccagcacttgcctga-gattgacacgcaaaactatgcatcacatttgtc 379

                                                 
Query: 181 tcctgtagccaaaaaatgtctttcttccatcacttatt 218
           ||||||||||||||| ||||||||||||||||||||||
Sbjct: 380 tcctgtagccaaaaa-tgtctttcttccatcacttatt 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 618
Length adjustment: 9
Effective length of query: 211
Effective length of database: 609
Effective search space:   128499
Effective search space used:   128499
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)