BAC Information

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BAC

Clone NameMSMg01-064N03
Chromosome11 (Build37)
Map Location 67,820,108 - 67,820,453
singlet/doubletsinglet
Overlap geneStx8
Upstream geneA730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16
Downstream geneNtn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064N03.T7 (MSMg01no064_n03.b1)MSMg01-064N03.TJ (MSMg01no064_n03.g1)
ACCAG290182AG290183
length1,214726
length of high quality
(start - end)
344 (49 - 392)---
definitionCHROMAT_FILE: MSMg01no064_n03.b1 PHD_FILE: MSMg01no064_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:04 2005CHROMAT_FILE: MSMg01no064_n03.g1 PHD_FILE: MSMg01no064_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCAGATTTGGGCCTATAGACTCCTTAGGGAGAGGATCCGCGGAATTAC
TTCTTTTCACTCCTTGCTCAGTTGATAAGAATGCCCTCCCTGTGAACTCT
GACAGGTTCCAACTGACTTTGTTACCACAGATGGATTATCTGAGTGCTCC
CCCCCCCACCGTGCTACTATAATTTAATAACATACACTAATTTCTTGAGA
GGCTGAGTAAAATCATGTTATGTCCTTATAAGTGATCATGAAACATGTTG
AGGATTCTAATATGCCATCATGTCTACTAATTATTATATTATTATAGATA
AGGTCTATCTTCAAAGAATATGGATAGAAATTACTGATTTATTAAAAAAC
AAACCCCCCACACACACACACGCACACACACACGCACACACACGCATTTT
TTCACGCACACACGCACACACACGCGTACACACACACCGTCCACCATGTT
TTTTTTCCCCCCCCCCCAGNANCTGGAAAATACCACAAAAAAGGAGGGTT
TGAGCCCAAGAATTCAAGGCCAGGTTGGCCTCATCGCAAAAGAGAAACCC
AGGAGTTGCGGTGGCTGAAGCCCTGTGGTGGGATGGGTTTAATCTCTGGT
GATTTAACAAGGAAAATCAAGTCTGTTCTACCTCAGAGCACAGTAATTAG
CTTGTCCTTTCTTTAACTTAAGAGATCTGACTTGTCACCCGCAGGCAAGG
CTGAGCTGGAACATGTTTTTCTGAAAGAATTCCCTTTCAAAGCAATTCTC
CCCCTCTGCTGCAGAGCATTGGCTCTTTGCTGCTAACTTGTGAGGGCAGG
TATCCCCTTTGATTACGACTTTTGTTTTAATTTCTCCAGATGAAAATGTT
AAGTTTCTCCTGCTGCTTCCCTCCGTTCCAAGCCCTCAGGGTTTCCCAGC
CCCTTTTTTGTAACCGTTTCCCCAAATGTTGTTTTCTCCCGGCTCACTCC
AAAAGTTTCCCCTTTCTGGGGGCCTGGTGAATATAACCTGACCTGGTATT
TTGTCCCCTCTTCTCTCCCGCACTCTCTTTACTTTTACATATTGTCACCG
ATCAATTTAACTATCCATCTCTCCCACCCCTCTTTTTTTAAAATTACCTC
CTTTCCCTGCCTGCTTCATAAAATGACCTCCTTCGCTATCTCCTCTCTTC
TTTCTCTTTTTTTTCTATCATACGGCTTCAACAATTCATTCTTCTCTTTC
ATTTTATCTTCCCC
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTAAAAGCTTATAAGGTTA
TTCTGGAATTTAACCGGCCCAAACGAAGGAAAAATAGGGGTTAAAAAAGC
CGGTTGGGGAATCAAACCCGGAACTGGACCCGGGCAAGGTTAAACCCGGA
TGGTTGGCCCTCCAAGTGGTGAAAAAGAACTTGGTGGGGATTTTTCAAAC
TGGGCCCCATAAGGGGGCCAGGGTGGGCCGGAAAGCCATGGCCAAGCCCC
AAATTCACAAAAAGGACCCCCCTCGGCATCCCGGAGCGAAAAGGGAAGGG
GCCATCACTTTTTTTTAAAACACCACCCCCCGGCAAAAGTGGTCAAGAAA
AAAAAAAAGGAAAAACCTCCCCACCAAAAAAAAAAGGGTGGGTTCCGAAC
CTACCCTTTACCATACCAAAAGGAGAAACTTTTGAAAGTTGAAAAGGGGC
AGGAAACCAGGAAAAAAAACCTTCAAATAATTTCTCATTGGACTTGGAAG
AACATAAAAAGTCAGCCTTCTCAGCCTCGCCCCACCCCCTTAAATGGCAA
ATCCGGCCTTTCAGGGTAAGGGGTAAGGCTGGGTTCCCAGAAGGGGGTTG
GGCCTAAAAACCTGGCTTTTCCAAGGTCCGGTTCCCCACTTCCCCAGGCC
CCGGGCTAAAAGCATCCTCTCCGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_n03.b1 MSMg01no064_n03.b1 CHROMAT_FILE:
MSMg01no064_n03.b1 PHD_FILE: MSMg01no064_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:04 2005
         (344 letters)



>mm_chr11_67819908_67820652
          Length = 745

 Score =  603 bits (312), Expect = e-177
 Identities = 337/346 (97%), Gaps = 3/346 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcttttc-actccttgctcagttgataagaatgccctccctgtgaactctgacaggt 59
           |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttcttttcaactccttgctcggttgataagaatgccctccctgtgaactctgacaggt 260

                                                                       
Query: 60  tccaactgactttgttaccacagatggattatctgagtgctcccccccccaccgtgctac 119
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccaactgactttgttagcagagatggattatctgagtgctcccccccccaccgtgctac 320

                                                                       
Query: 120 tataatttaataacatacactaatttcttgagaggctgagtaaaatcatgttatgtcctt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataatttaataacatacactaatttcttgagaggctgagtaaaatcatgttatgtcctt 380

                                                                       
Query: 180 ataagtgatcatgaaacatgttgaggattctaatatgccatcatgtctactaattattat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataagtgatcatgaaacatgttgaggattctaatatgccatcatgtctactaattattat 440

                                                                       
Query: 240 attattatagataaggtctatcttcaaagaatatggatagaaattactgatttattaaaa 299
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 attattatagataaggtctatcttcaaagaatatggacagaaattactgatttattaaaa 500

                                                         
Query: 300 aacaaaccccc--cacacacacacacgcacacacacacgcacacac 343
           |||||||||||  | ||||||||||||||||||||||| |||||||
Sbjct: 501 aacaaacccccgccccacacacacacgcacacacacacacacacac 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 745
Length adjustment: 9
Effective length of query: 335
Effective length of database: 736
Effective search space:   246560
Effective search space used:   246560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)