Query= MSMg01no065_c18.b1 MSMg01no065_c18.b1 CHROMAT_FILE:
MSMg01no065_c18.b1 PHD_FILE: MSMg01no065_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:36 2005
(253 letters)
>mm_chr11_46611574_46612226
Length = 653
Score = 474 bits (245), Expect = e-138
Identities = 251/253 (99%)
Strand = Plus / Minus
Query: 1 atttccctatcaacacagcatgtccaaagtctcaccaacatctctagggaacataataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 atttccctatcaacacagcatgtccaaagtctcaccaacatctctagggaacataataaa 288
Query: 61 ttctggttatgtttttttgaaggttggcaaatcttaggatcaagtgatttcctcaaaatg 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 287 ttctggttatgtttttttgaaggttggcaaatcttaagatcaagtgatttcctcaaaatg 228
Query: 121 taaaacagtatattaaaatagctggtaatacaaatatatatacacatacacataaacaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 taaaacagtatattaaaatagctggtaatacaaatatatatacacatacacataaacaca 168
Query: 181 tacaatatacaatattgatatcaaaaagaaaatggcctaaatacatgtacattaatatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tacaatatacaatattgatatcaaaaagaaaatggcctaaatacatgtacattaatatga 108
Query: 241 agagccacacaga 253
|||| ||||||||
Sbjct: 107 agagtcacacaga 95
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space: 157136
Effective search space used: 157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no065_c18.g1 MSMg01no065_c18.g1 CHROMAT_FILE:
MSMg01no065_c18.g1 PHD_FILE: MSMg01no065_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:36 2005
(241 letters)
>mm_chr11_46582870_46583507
Length = 638
Score = 325 bits (168), Expect = 1e-93
Identities = 224/244 (91%), Gaps = 9/244 (3%)
Strand = Plus / Minus
Query: 1 aatgctgatcca-atccattagccaagtgaccttcctttgtcctcaaggtcctgacagaa 59
||||||||| || || ||||| | |||||||||||||| ||||||||||||||||||||
Sbjct: 438 aatgctgat-cacatgcatta-caaagtgaccttccttcctcctcaaggtcctgacagaa 381
Query: 60 gcacttaggaatgcacgcttgagcattcaacactgtgatggaaaacacaggtgatgttat 119
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 380 gcactta-gaatgcactcttgagcattcaacactgtgttggaaaacacaggtgatattat 322
Query: 120 tattgttatgtgatgaaggagcagtgaggagagtgaatactgtggagttcactttaacaa 179
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattgctatgtgatgacggagcagtgaggagagtgaatactgtggagttcactttaacaa 262
Query: 180 tatcgtatcgctaatgagaaatgttcaacaacttgtcaaaagaaatgt--ggctagtatt 237
||| ||||| |||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct: 261 tattgtatctctaatgagaaatgt-caacaacttgtcaaaagaaatgtatg--tagtatt 205
Query: 238 ggtg 241
||||
Sbjct: 204 ggtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 638
Length adjustment: 9
Effective length of query: 232
Effective length of database: 629
Effective search space: 145928
Effective search space used: 145928
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
