Query= MSMg01no065_j02.b1 MSMg01no065_j02.b1 CHROMAT_FILE:
MSMg01no065_j02.b1 PHD_FILE: MSMg01no065_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:07 2005
(556 letters)
>mm_chr11_33264785_33265737
Length = 953
Score = 799 bits (413), Expect = 0.0
Identities = 428/435 (98%), Gaps = 5/435 (1%)
Strand = Plus / Minus
Query: 1 cattcatccgttcatttattcacagaagtgtgacctgtgtttacatggtctagattgcat 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cattcatccattcatttattcacagaagtgtgacctgtgtttacatggtctagattgcat 371
Query: 61 tacatattagctgttctttgatcaaataaatagctggtagatagaaagatgttcttaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tacatattagctgttctttgatcaaataaatagctggtagatagaaagatgttcttaaca 311
Query: 121 ccctccacacaatgggtatcttcattttagctttttaaaattcaggatcattctatagta 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 310 ccctccacacaatgggtatcttcattttagcttttt---attcaggatcattctatagta 254
Query: 181 ggtcaaccatttagattcagttacctcagttaattcatagaacagttcctccaagctata 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggccaaccatttagattcagttacctcagttaattcatagaacagttcctccaagctata 194
Query: 241 attattgctcttttcaaggaggaaattaagtctgtgataagttagatgttgtccccgagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 attattgctcttttcaaggaggaaattaagtctgtgataagttagatgttgtccccgagt 134
Query: 301 tatagctaataagaggaggatctgggagttcagcctagcttctccaaatctagatagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tatagctaataagaggaggatctgggagttcagcctagcttctccaaatctagatagaag 74
Query: 361 ctctccacttttaatctctgtgtcaaaagatttcagagtgagttctaagaacctttttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 --ctccacttttaatctctgtgtcaaaagatttcagagtgagttctaagaacctttttgg 16
Query: 421 tctccatgatgcttt 435
|||||||||||||||
Sbjct: 15 tctccatgatgcttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 953
Length adjustment: 10
Effective length of query: 546
Effective length of database: 943
Effective search space: 514878
Effective search space used: 514878
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_j02.g1 MSMg01no065_j02.g1 CHROMAT_FILE:
MSMg01no065_j02.g1 PHD_FILE: MSMg01no065_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:07 2005
(532 letters)
>mm_chr11_33112832_33113763
Length = 932
Score = 990 bits (512), Expect = 0.0
Identities = 527/532 (99%)
Strand = Plus / Plus
Query: 1 aggttcagatggcatctgtctcgacccagaacccacactgaagtgagggctgcgtcttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 aggttcagatggcatctgtctcgacccagaacccacactgaagtgagggctgcatcttca 260
Query: 61 ccaaatccacagccgtggtcacaggcactagcctggtttactatgttctttggttgaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaatccacagccgtggtcacaggcactagcctggtttactatgttctttggttgaata 320
Query: 121 cagtttctagacccttcagcattgtgggaatccagatagacttgaaacatgtgctgcttt 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtttctagaccctttagcattgtgggaatccagatagacttgaaacatgtgctgcttt 380
Query: 181 gaatactgaatttacattgtatgtgcactattataaatttttataattaactcagactta 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 gaatactgaatttacattgtatgtgcactattataaatttttataattagctcagactta 440
Query: 241 taaaaatgtagggctttagctgcttgttctgaaaaatacactcttctgggctggccagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaaatgtagggctttagctgcttgttctgaaaaatacactcttctgggctggccagca 500
Query: 301 tcgtagtctggaacccagaccttccagagtctcttgacaaaggctgcacagcccacgctc 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 tcgtagtctggaacccagaccttccagattctcttgacaaaggctgcacagcccacgctc 560
Query: 361 aggagctgggtcagctcatcatgtccaggctgcttaggtcagtgtggccatcgctacgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggagctgggtcagctcatcatgtccaggctgcttaggtcagtgtggccatcgctacgca 620
Query: 421 gggcctctgccacatctcttctgaagacggagaggttctgggtaaacctgtggaaagaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggcctctgccacatctcttctgaagacggagaggttctgggtaaacctgtggaaagaga 680
Query: 481 agcagtgaacacgcaggccgtaagaacctctagaggaagggcaccgtggggc 532
|||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 agcagtgaacacgcaggccgtaagaagctctagaggaagggcaccgtggggc 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
