BAC Information

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BAC

Clone NameMSMg01-065L04
Chromosome11 (Build37)
Map Location 69,215,488 - 69,215,991
singlet/doubletsinglet
Overlap geneJmjd3
Upstream genePik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88
Downstream geneDnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065L04.T7 (MSMg01no065_l04.b1)MSMg01-065L04.TJ (MSMg01no065_l04.g1)
ACCAG290846AG290847
length744695
length of high quality
(start - end)		---504 (69 - 572)
definitionCHROMAT_FILE: MSMg01no065_l04.b1 PHD_FILE: MSMg01no065_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:17 2005CHROMAT_FILE: MSMg01no065_l04.g1 PHD_FILE: MSMg01no065_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGCCGCCAAAGACTCACAAAATCGTTATGCCCGGAATCATTNC
TATAACTGGATCGAAGCTGCAGCAGAAAGAAAAAAAACNCTTTAAAAGAG
GAAAACAACTCTGTGTGTGTCTGTATCTATATATGTAGTGTATAGTATCC
TCTATGTGTGTATCCCCCCCCTTCTCCAACCACCCCTCCTTTACACACCC
CTCCACTCCATACCTACCCCCCCCCCCCCCTTTCCTTTTTTTACACACCC
CCAACAAAATAACTATAAAAAACCCAACTTATTTAAACCCTTCACCAACC
CCCCTTTTTTATAATTTCTAACACACACAACAAAAACAAACCCATAAAAA
CAATTATTAATTTCCCCCCACTATTATACATATCATCTAATTTTTATTAC
AATCACTATCATTATCCCCATAAAACTCCCCTAATAACCACACCCCAATC
AAATTATTATCAAATACACCCTACAAAATCAATTCCCTACATATTAAAAA
ATCAAAAAAAAAACCCCTTTTACATCATCAGATATATAAAATAACCTCCA
AATATAATACACCATAACCAATAAAACCCCAACCAAATAACTTAAATAAC
AAAACATAATAAAATACTAAAAAAAATATAAATAAACATTTTCTAACACC
ACACAAATATAAAAAACACTCTAATATTTTTTTTATTTTACAACATCTTT
TTACCACTACAACAAACATTTAACACCAAATATATAATTACTCG

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTAGGCGAGAGACCTGAGGCATGAAGTAGTTGC
AGAAAGGGGCTGAGAAGGAGGCAGCCTCGTCAGCTTCTTAGGATTGTGAT
TCGTGCCCATTCCTTGGTGCTGAATTCTGCCAAATCTCTGTCCACGTCGT
CAGAGCCCTGGCCTGGAAGGAAAGGGGTGAGCTGAGCCTCTGACCTGACT
GACATCTTGTTTGGCACTCCTTTCAGACTTAGGCCTTTTCTCCACCAAGA
CTCTGGTGGAGGCGAGCGGTGAACATACGGTGGAGGTCCGTACCCAAGTA
CAGCAGCCCTCAGACGAGAACTGGGACCTGACAGGTACCAGACAAATCTG
GCCCTGTGAGAGCTCCCGTTCCCACACCACCATCGCTAAATACGCACAGT
ACCAGGCCTCGTCCTTCCAGGAGTCACTGCAGGTGAGGATCAGGCACAAG
AGGGAGTAAGGGTGCTGGGCTTACTGGGTCAGGGCTTCAGGAAGTCACTG
ACCCACGTACCTGTGTGACCAAGCAGGAGGAGAGGGAGAGTGAGGATGAG
GAATCCGAGGAACCAGACAGCACTACAGGAACCTCTCCCAGGTGAAATAC
AAGTTTGGCCCTCCCTGCTTCTCTCTCTCTCCTCCTTGGCCTCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_l04.g1 MSMg01no065_l04.g1 CHROMAT_FILE:
MSMg01no065_l04.g1 PHD_FILE: MSMg01no065_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:17 2005
         (504 letters)



>mm_chr11_69215288_69216191
          Length = 904

 Score =  967 bits (500), Expect = 0.0
 Identities = 503/504 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggcgagagacctgaggcatgaagtagttgcagaaaggggctgagaaggaggcagcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 taggcgagagacctgaggcatgaagtagttgcagaaaggggctgagaaggaggcagcctc 645

                                                                       
Query: 61  gtcagcttcttaggattgtgattcgtgcccattccttggtgctgaattctgccaaatctc 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gtcagcttcctaggattgtgattcgtgcccattccttggtgctgaattctgccaaatctc 585

                                                                       
Query: 121 tgtccacgtcgtcagagccctggcctggaaggaaaggggtgagctgagcctctgacctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tgtccacgtcgtcagagccctggcctggaaggaaaggggtgagctgagcctctgacctga 525

                                                                       
Query: 181 ctgacatcttgtttggcactcctttcagacttaggccttttctccaccaagactctggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ctgacatcttgtttggcactcctttcagacttaggccttttctccaccaagactctggtg 465

                                                                       
Query: 241 gaggcgagcggtgaacatacggtggaggtccgtacccaagtacagcagccctcagacgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gaggcgagcggtgaacatacggtggaggtccgtacccaagtacagcagccctcagacgag 405

                                                                       
Query: 301 aactgggacctgacaggtaccagacaaatctggccctgtgagagctcccgttcccacacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aactgggacctgacaggtaccagacaaatctggccctgtgagagctcccgttcccacacc 345

                                                                       
Query: 361 accatcgctaaatacgcacagtaccaggcctcgtccttccaggagtcactgcaggtgagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 accatcgctaaatacgcacagtaccaggcctcgtccttccaggagtcactgcaggtgagg 285

                                                                       
Query: 421 atcaggcacaagagggagtaagggtgctgggcttactgggtcagggcttcaggaagtcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 atcaggcacaagagggagtaagggtgctgggcttactgggtcagggcttcaggaagtcac 225

                                   
Query: 481 tgacccacgtacctgtgtgaccaa 504
           ||||||||||||||||||||||||
Sbjct: 224 tgacccacgtacctgtgtgaccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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