BAC Information

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BAC

Clone NameMSMg01-065P19
Chromosome11 (Build37)
Map Location 90,526,741 - 90,671,091
singlet/doubletdoublet
Overlap geneTom1l1
Upstream genePctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11
Downstream geneLOC638903, EG664976, Kif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065P19.T7 (MSMg01no065_p19.b1)MSMg01-065P19.TJ (MSMg01no065_p19.g1)
ACCAG291067AG291068
length677740
length of high quality
(start - end)		634 (34 - 667)560 (129 - 688)
definitionCHROMAT_FILE: MSMg01no065_p19.b1 PHD_FILE: MSMg01no065_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:38 2005CHROMAT_FILE: MSMg01no065_p19.g1 PHD_FILE: MSMg01no065_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,670,463 - 90,671,091)(90,526,741 - 90,527,300)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGAATTCTCACC
TTATCTCTCCCTGATGTGTTCTAGCTGGGTCTGAGTCTAAACTCTTCTAA
TCACAGCTGAGTTCCTCGAATCCTAACACTTTGACCACAGTTATTCAATC
CCTACAATGTCTGACAGATCACAGTGAATCTTAACTGACAATAGTCTTGA
CAAGAGAGTAAACCAATTAGGCCTATAATTTGTTACAGGGCAAGAAGGAA
CAGGGAGAGATTGGGGCAGTAATTTATGTAGAGAAGAAAGGAAATAGCTA
GGCATGATCTGTTACTCTGAAGTGGTCATTTAACTTTACATGAAAAGTGG
CTTAAAAAGACAAATATGAAGAAGTTCCCTAAGAGGCTTCACTTGATATT
TCTCTGCCAGTGTGGCATGCTCTAAGAGACTGTCTATGAAGGTGCTTCAT
AGATGAAGGATGTTTGTACACATGACAGTGTGATCCTCATTGAAACATTG
TGAAGTGAAATGACATCATTCTCCCCATCTGATCGATGAAGAGAGAGGCA
TTCAGAGTTTTTGACAAAGTCAAGTGCTTGGGAAATCTGTTAACATATTT
GTAGCCATGGGAGCACAGATGCAGAGCCCACATTAATGGAACATATACAA
TATTTCTTTAGGTGGCTACTTCAGACG

NNNNNNNNNNNNNNNNNNNCCCCTTTNCCCCCCNNCGTTCGTTCTCTTCC
CACTCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGGGCTGAGCTTGCTTACTT
TCCCCACTTTCTTGGCTCCATCACCCTCCTTGCAGCTGCTGCCAGCCCAT
TAGTCTGTGCTGTTGTGTTCTCAAACTTCTGGGTTACCTTTGAATTTCTT
TCATCTACAAGACTAAAAACTTTCAAAGGGGACCCCAGGTTTCTCAATTA
CATTGTAATGACTTCAAAAGCGGAGGCCTTAGGTGCTACCTTCGGGTTCT
TTCCAAACAAGCCACAGAACTATTCAGGCCCATAGCAAAGGGCCATAGGC
TAGCCATCTACAGCCAGTCCTTGGCTTCCAAACTAGAAGTGAATTGGTCC
AGAGAGACATTTGCTCGGGAGACCAGGTTATTTATCCAATTCTACCTACA
GCGTGTTGCTCTCCTGCGCACGAATTGGCCCCTTTCTAACTATGCTAGCT
CATCGCTAAAGAGAAGGAGACAGACTCCAAGACACACTATAAAAGTCTCT
TCTGCTCTATTTCTTACAAATGGTGACAACAATGAGAACGGCCAAAGGAC
AAGTGCTTTTCCTTCCCTTTCTTTTCTTTGCCCCTTTTTCTTTACTTTCG
GGGTCCCCCACTCCCACCCCCATCCCGCCAACTGGTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_p19.b1 MSMg01no065_p19.b1 CHROMAT_FILE:
MSMg01no065_p19.b1 PHD_FILE: MSMg01no065_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:38 2005
         (634 letters)



>mm_chr11_90670445_90671478
          Length = 1034

 Score = 1185 bits (613), Expect = 0.0
 Identities = 625/629 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattctcaccttatctctccctgatgtgttctagctgggtctgagtctaaactcttct 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ggaattctcaccttatgtctccctgatgtgttctagctgggtctgagtctaaactcttct 588

                                                                       
Query: 66  aatcacagctgagttcctcgaatcctaacactttgaccacagttattcaatccctacaat 125
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 587 aatcacagctgagttcctcgaatcctaacactttgaccacagtgattcaatccctacaat 528

                                                                       
Query: 126 gtctgacagatcacagtgaatcttaactgacaatagtcttgacaagagagtaaaccaatt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gtctgacagatcacagtgaatcttaactgacaatagtcttgacaagagagtaaaccaatt 468

                                                                       
Query: 186 aggcctataatttgttacagggcaagaaggaacagggagagattggggcagtaatttatg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aggcctataatttgttacagggcaagaaggaacagggagagattggggcagtaatttatg 408

                                                                       
Query: 246 tagagaagaaaggaaatagctaggcatgatctgttactctgaagtggtcatttaacttta 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tagagaagaaaggaaatagctaggcatgatctgttactctgaagtggtcatttaacttta 348

                                                                       
Query: 306 catgaaaagtggcttaaaaagacaaatatgaagaagttccctaagaggcttcacttgata 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 catgaaaagtggcttaaaaagacaaatatgaagaagttccctaagaggcttcacttgata 288

                                                                       
Query: 366 tttctctgccagtgtggcatgctctaagagactgtctatgaaggtgcttcatagatgaag 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tttctctgccagtgtggcatgctctaagagactgtctatgaaggtgcttcatagatgaag 228

                                                                       
Query: 426 gatgtttgtacacatgacagtgtgatcctcattgaaacattgtgaagtgaaatgacatca 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gatgtttgtacacatgacagtgtgatcctcattgaaacattgtgaagtgaaatgacatca 168

                                                                       
Query: 486 ttctccccatctgatcgatgaagagagaggcattcagagtttttgacaaagtcaagtgct 545
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ttctccccatctgatcaatgaagagagaggcattcagagtttttgacaaagtcaagtgct 108

                                                                       
Query: 546 tgggaaatctgttaacatatttgtagccatgggagcacagatgcagagcccacattaatg 605
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 107 tgggaaatctgttaacatatttgtaaccatgggagcacagatgcagagcccacattaatg 48

                                        
Query: 606 gaacatatacaatatttctttaggtggct 634
           |||||||||||||||||||||||||||||
Sbjct: 47  gaacatatacaatatttctttaggtggct 19


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no065_p19.g1 MSMg01no065_p19.g1 CHROMAT_FILE:
MSMg01no065_p19.g1 PHD_FILE: MSMg01no065_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:38 2005
         (560 letters)



>mm_chr11_90526541_90527500
          Length = 960

 Score = 1044 bits (540), Expect = 0.0
 Identities = 555/560 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgggctgagcttgcttactttccccactttcttggctccatcaccctccttgcagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgggctgagcttgcttactttccccactttcttggctccatcaccctccttgcagctg 260

                                                                       
Query: 61  ctgccagcccattagtctgtgctgttgtgttctcaaacttctgggttacctttgaatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgccagcccattagtctgtgctgttgtgttctcaaacttctgggttacctttgaatttc 320

                                                                       
Query: 121 tttcatctacaagactaaaaactttcaaaggggaccccaggtttctcaattacattgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tttcatctacaagactaaaaactttcaaaggggaccccaggtttctcaattacattgcaa 380

                                                                       
Query: 181 tgacttcaaaagcggaggccttaggtgctaccttcgggttctttccaaacaagccacaga 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacttcaaaagcagaggccttaggtgctaccttcgggttctttccaaacaagccacaga 440

                                                                       
Query: 241 actattcaggcccatagcaaagggccataggctagccatctacagccagtccttggcttc 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actattcaggcccgtagcaaagggccataggctagccatctacagccagtccttggcttc 500

                                                                       
Query: 301 caaactagaagtgaattggtccagagagacatttgctcgggagaccaggttatttatcca 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 caaactagaagtgaattggtccagagagacatttgctcgggagagcaggttatttatcca 560

                                                                       
Query: 361 attctacctacagcgtgttgctctcctgcgcacgaattggcccctttctaactatgctag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 561 attctacctacagcgtgttgctctcctgcgcacgaattggcccctttctaactatgctac 620

                                                                       
Query: 421 ctcatcgctaaagagaaggagacagactccaagacacactataaaagtctcttctgctct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcatcgctaaagagaaggagacagactccaagacacactataaaagtctcttctgctct 680

                                                                       
Query: 481 atttcttacaaatggtgacaacaatgagaacggccaaaggacaagtgcttttccttccct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttcttacaaatggtgacaacaatgagaacggccaaaggacaagtgcttttccttccct 740

                               
Query: 541 ttcttttctttgcccctttt 560
           ||||||||||||||||||||
Sbjct: 741 ttcttttctttgcccctttt 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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