BAC Information

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BAC

Clone NameMSMg01-068C07
Chromosome11 (Build37)
Map Location 67,813,464 - 67,813,682
singlet/doubletsinglet
Overlap geneStx8
Upstream geneA730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16
Downstream geneNtn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068C07.T7 (MSMg01no068_c07.b1)MSMg01-068C07.TJ (MSMg01no068_c07.g1)
ACCAG292706AG292707
length826867
length of high quality
(start - end)
73 (106 - 178)242 (142 - 383)
definitionCHROMAT_FILE: MSMg01no068_c07.b1 PHD_FILE: MSMg01no068_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:28 2005CHROMAT_FILE: MSMg01no068_c07.g1 PHD_FILE: MSMg01no068_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTTTCCCCCCTCTCTCACTTCTTCCCCCCCCCCTTTCTTTT
GTTTTTNTTTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTCAAGCCCTGCATATCTTGTGGGAGTGCTCGGACC
CACATGGTAAGCCAGCCCTGCCTTTGAGAGGAGCTGCTCCTGAGGCTTTT
GGACCATCTCTTTGCCCCTCAGATGCCACTGTTCCGAAGGCTGAATATTA
ATTTCCACAGCATTCCATACTAGTACTTATGAAAATAGGATTTGTTCGGC
TTTGCTTGCTTCTCCTGATTTGCTCTCTGGTTGATTCTCTTTTGCTGGTA
CCAAACATGACCATTTAACTTTAATTTCCACTCCTTTTTAATTTATAGAA
GTCCCATTTGACACCTTTTCATTTTTTGTTGCCCCCCCCCACCCCCGGTT
GTGTTATTTCCCCCTCTTTACCCCCCGCCCTAACAAAAAAAAAAAAAAAA
ATTTTGTTTGCCGGGGGTTTTTTCCCTTATCCTCCAAATCTTTCTTTTCC
CCTTTTGTTATTTCTACCTTTATTCTCCTTAGTCTTTAATTTTGTTTTTT
TTTTCCCACCCCTTTTGCCTGTTTTTTTCCATTATTCTACTATTCTATAT
CTATTCCCCCCCTTTTTTTAAATCTCTATTTCTCTTTATTTTTTTTCCCC
TTATCTATCCCCATCTTATATTTCTTCCCCCTTTCTCCTACCTTTTCTGT
TCCACTCTTATTTTACTAACTGTACTTGCCCTTCCTCCTTTCCATTAATT
GTTGACTCCACCCTTGTATCTTTGTN
CCCCCCCTCNCCCCCNTCNNCCCCCTTTTCTCTTCCCTTCTCTTCTACAC
TTGTTTTTTTTTNTTCGATTGAATXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCTGCCG
TTCAGTTCTCTCTTTAGCCTTTCCCCTGTCTGTGGATTGCAGACCTGTCT
GTCGTTTTCATGTCTCCCTTCATGGGCTCCAGACTCTCCCCAGCCTGGTC
GGCTTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTTTTTCT
TCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CCTCTTCTTCTTCTCCTTCTCCTTCTTTTTTTTTTTTTCCCCCCCCCCCC
CCCCTTCTCCTTCCTTTTTTTTTTTTTACCCTTTACTTTAACCCCCCTTA
AAATATAAAAATTTACTCTCTTTTTTTCCTCGGCCTTTGTTTCCCTTTTC
TCCTTCCCCTTTTTAACCCATTTCTTTCTTCACTCTCCCATTTTTTATTA
CCTTTTATACCTTAAATCTTAAAATACTTCTATTTTCTCACTATGCTAAC
AAATTATTTATTTATCTTTTTTTCCCCTTTTTCCCGCCTTTTTCCCCCCT
TTTTTCTTTCCTTTTCACTTTTCGTCATCCCCCTTTATTTTTTATTTCTT
TTTGTTTTATTTTTTTCCGTCCATCCCTACCTATTCTTTATCAACTCTTC
ATTTCTCTATCTTCTTTTCCCCGCCTACTTTATATCCCTATTCTCTCCTT
TCTCCCTTTTCTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_c07.g1 MSMg01no068_c07.g1 CHROMAT_FILE:
MSMg01no068_c07.g1 PHD_FILE: MSMg01no068_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:28 2005
         (242 letters)



>mm_chr11_67813264_67813905
          Length = 642

 Score =  292 bits (151), Expect = 1e-83
 Identities = 210/241 (87%), Gaps = 23/241 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgctgccgttcagttctctctttagcctttcccctgtctgtggattgcagacctgtctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgctgccgttcagttctctctttagcctttcccctgtctgtggattgcagacctgtctg 260

                                                                       
Query: 61  tcgt-tttcatgtctcccttcatgggctccagactctccccagcctggtcggcttgctgc 119
           || | |||||||||||||||||||||||||||||||||||||||||||||    ||||  
Sbjct: 261 tc-tctttcatgtctcccttcatgggctccagactctccccagcctggtc----tgct-- 313

                                                                       
Query: 120 tgctgccgctgctgctgctgctgctgctgctgctttttcttcctcttcttcttcttcttc 179
                    ||||||||||||||||  |    ||| |||||| |||||||||||||||||
Sbjct: 314 ---------tgctgctgctgctgct--t----cttcttcttcttcttcttcttcttcttc 358

                                                                       
Query: 180 ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc 239
           ||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||||| ||||
Sbjct: 359 ttcttcttcttcttcttcttcttctccttctccttctccttctccttctccttctccttc 418

            
Query: 240 t 240
           |
Sbjct: 419 t 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)