BAC Information

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BAC

Clone NameMSMg01-068P04
Chromosome11 (Build37)
Map Location 86,356,689 - 86,508,245
singlet/doubletdoublet
Overlap geneRps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc
Upstream geneBcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik
Downstream geneDhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068P04.T7 (MSMg01no068_p04.b1)MSMg01-068P04.TJ (MSMg01no068_p04.g1)
ACCAG293323AG293324
length708707
length of high quality
(start - end)
320 (49 - 368)291 (79 - 369)
definitionCHROMAT_FILE: MSMg01no068_p04.b1 PHD_FILE: MSMg01no068_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:33 2005CHROMAT_FILE: MSMg01no068_p04.g1 PHD_FILE: MSMg01no068_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,507,931 - 86,508,245)(86,356,689 - 86,356,979)
sequence
NAATATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAACAAGATATTGCTGTTCTTCAGTTTTGTTTGTGGAATTTG
AAATTACTCCAATTTAAAATAAATTACTGCACTGTGGAAATAACATGTAG
AATTGCAGTTTTAATTAAATACATCTCAAACCAGAATCATGGTTTTCATA
GTTTCATACTGGATACTGCTGGAGCATTACCGGGAGCCATAGAGGGAAAT
TATGAAAAAGAGATGCATTATGTCAATTACATTCCTGTAGTTATGAAAGA
TTATACAGCAGTCAGTGAATAGTGGACTCCTTCTCACGTTTCCAGCATTT
TAACCAAGTAGCACTCCTTTTTTTTATCCCCCTCCCGCAACTAAGAAAAG
TATGAGTGTTACACTGACTTGAAATAAAGGTATATTATTTAAAATATCAT
GGTATTTCTTTTCAACATAAAGGGCTCCATAATTTAAATTTTTGCCATGG
CTGAGAATACTGAATTTACTTTGATAACAACTTAATTATCTATAGTTATA
GAGCATATTGCCTAGCTTCTATTGCTCTACATCTCTCAGGCTAATTAACA
TCATCTTCTCATACATACCCTTACCAAATTATTATTTACCGTAAAGTCTC
TTTTTCCATTCGTCTTAATTGAAACCGTGAACTTCTAGGTTAAAGTTTGT
ACTTGTGT
NAAAATCTATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATGAAAACATGAAATTAAA
AAGTGCGTGTAATACCCACATTTAGAACTCTGAAATTCTAACTGAGACTC
ACTTGATTATGAAAAGAATAATCTATGTGGGCCCACTTAATTTCCTAAAG
TGTTCAAAGTCCTTTATACATAGCATTTCAATAGTTTGCCAGAAGGGCAC
AATTTATTCACTAAAGGAAAACTGGGGGTGAGAAGGAGACCCCATGTAAA
TACAGCAACTATCTAACATCAGCCATAAACCCATATTCTTCTACAGATGA
CTTAAAGACATTTAAAGTCTTTTTTAGCCCACCCCCGATGACATTTGTCC
AAGATTGGTTATTTAGTTTGATGTATTTTTTTAACCCTTGATGTAAAATA
TGTACGTTTCAGTAAGTATTACTGTAGAATAAATGGTATACATAAATAAC
TAACTACTAGGACAGCTAAGGTAAAGCCAAGATGTGCACTATAAAAGCGA
CTCTAAATTTTAAACTTCTAGCTAGGAATATCTTCACACCACTATTCACA
AGTCTCGGTTCAAGCTATTTATTTTTGGCGAGTACAATCCTAGCTGTTAT
TGCTTTTTTTTCCACCCTAACTTTACTTAATTTATTCTGAATATAATAAA
TTAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_p04.b1 MSMg01no068_p04.b1 CHROMAT_FILE:
MSMg01no068_p04.b1 PHD_FILE: MSMg01no068_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:33 2005
         (320 letters)



>mm_chr11_86507727_86508446
          Length = 720

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaacaagatattgctgttcttcagttttgtttgtggaatttgaaattactccaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcaaacaagatattgctgttcttcagttttgtttgtggaatttgaaattactccaa 460

                                                                       
Query: 65  tttaaaataaattactgcactgtggaaataacatgtagaattgcagttttaattaaatac 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tttaaaataaattactggactgtggaaataacatgtagaattgcagttttaattaaatac 400

                                                                       
Query: 125 atctcaaaccagaatcatggttttcatagtttcatactggatactgctggagcattaccg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atctcaaaccagaatcatggttttcatagtttcatactggatactgctggagcattaccg 340

                                                                       
Query: 185 ggagccatagagggaaattatgaaaaagagatgcattatgtcaattacattcctgtagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ggagccatagagggaaattatgaaaaagagatgcattatgtcaattacattcctgtagtt 280

                                                                       
Query: 245 atgaaagattatacagcagtcagtgaatagtggactccttctcacgtttccagcatttta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atgaaagattatacagcagtcagtgaatagtggactccttctcacgtttccagcatttta 220

                          
Query: 305 accaagtagcactcc 319
           | |||||||||||||
Sbjct: 219 atcaagtagcactcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no068_p04.g1 MSMg01no068_p04.g1 CHROMAT_FILE:
MSMg01no068_p04.g1 PHD_FILE: MSMg01no068_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:33 2005
         (291 letters)



>mm_chr11_86356489_86357179
          Length = 691

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatgaaaacatgaaattaaaaagtgcgtgtaatacccacatttagaactctgaaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatgaaaacatgaaattaaaaagtgcgtgtaatacccacatttagaactctgaaattc 260

                                                                       
Query: 61  taactgagactcacttgattatgaaaagaataatctatgtgggcccacttaatttcctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taactgagactcacttgattatgaaaagaataatctatgtgggcccacttaatttcctaa 320

                                                                       
Query: 121 agtgttcaaagtcctttatacatagcatttcaatagtttgccagaagggcacaatttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgttcaaagtcctttatacatagcatttcaatagtttgccagaagggcacaatttatt 380

                                                                       
Query: 181 cactaaaggaaaactgggggtgagaaggagaccccatgtaaatacagcaactatctaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactaaaggaaaactgggggtgagaaggagaccccatgtaaatacagcaactatctaaca 440

                                                              
Query: 241 tcagccataaacccatattcttctacagatgacttaaagacatttaaagtc 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagccataaacccatattcttctacagatgacttaaagacatttaaagtc 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)