BAC Information

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BAC

Clone NameMSMg01-069A10
Chromosome11 (Build37)
Map Location 24,224,780 - 24,224,963
singlet/doubletsinglet
Overlap genenone
Upstream geneAhsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
Downstream geneLOC100042282
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069A10.T7 (MSMg01no069_a10.b1)MSMg01-069A10.TJ (MSMg01no069_a10.g1)
ACCAG293382AG293383
length698887
length of high quality
(start - end)
199 (77 - 275)---
definitionCHROMAT_FILE: MSMg01no069_a10.b1 PHD_FILE: MSMg01no069_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:39 2005CHROMAT_FILE: MSMg01no069_a10.g1 PHD_FILE: MSMg01no069_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACTCTATCTTGATCAGGGTCCAGATGACATATTGGCTGCC
ATGGTGTTAGGGACATCAGTAGCCCCATAAGGAGTAGTTGTCTAAGTATT
ATAATTGCATAAACAGTGGTCAGCTTTCCCATGAAAGTACCTAATTGAGT
AGTTAAGTATACTCTATTAGGCTGCAATTATGGATCTCTCCTCATGTGTG
TGTGTGTCTATGTGCCTGCGTGCCATTTGTGAACATATAGAAGCCCAAGG
ACAACTCGAGGTATCATTCCTCTTTTGCCATCCACCTTTTTTTGAGGTAC
AATTACTTTCTGTTTTTGTATCTCACCCCCCCCGCTAGGCTGCTTATCTT
ATGAGTTCCAGTGCTATACCTGCTCCTACCTACCACAGCTCTGAGACTAT
CAGGCTATGCCACCTTACTCTGCTTTACTTCCCGCGTTTTCTGATGACCC
CGATTTGTCGCTTCCCTTATCGTACCCCTTCACCGTTTAGACATTGCCCT
ATCCTTTTCCCATATATTTGACCATATACCGTCCTTTCTCTGTCTACTTA
TCCCTTTATCTATCCTTCATTATTTTTATCGTTATCCCTTGTTGTTCTGC
CATTTCCTCTTACTTTTACCTTCTTTTCTGACTTTTTCCCTTTTTGTC
AGAGGTGAAGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTG
CCTCGCGCAATTCTCGTGGTTACAACGATCTATAGGGAAGTTATGAGTAT
CCGCTAGGGTATGACCACCCCAGAAGAAGGGAGGGCGTTCCCCTACCCAT
GGGCCCGACACAACACTCTGTCCCCGAAACGACTACTCTGTTCACTTTTC
CGCTGCTAGATCTCTGCTTGTCCGCTATTAAAAAAGGAGGAACTGAACTT
ATACACATATCAAACTGATCCTTTTCGCCACATAAGAGAGGCTTTAGCGC
GATCAGAGTGTTCATTACATACGACAAATATAATCTAACCATAATCATCA
TTGATATTTTTTTATTTCATCGTACTTCTATCGTTCTAGCTTACTTATAT
CGTGAGTTATTTTTTGTGGTTATTCCCCACTAGCTAGCCGCCACGGGGAG
GAGAATTATGAGGGTGTGTAGTGTGTGGCGTTGTTTTTTCCCCCAAAAAA
AAAAAAAAATAAAAGAGGGTGTGGGTTCAGCNTTGCGGCGGGTCTCTCTT
CGCGCCTATACACCTAACTCTTATCAATCCTTTACGTGCTTTTATCCTCN
CACTATATATTACGTGAATACCGATCATCCACCTATAACCATAAAATTCC
AATCATCAATAATTCCCTGAATCCATGTACACCATCCTTCCGGTATTATT
TATAACGATGAGATCATAAAATACACCATAGCTAGCGATAACATAGCTAC
CTCGTACCGATTATTATATTTATATATGGCAATATTCTCCCCATGCATCT
TGCTTTCCGCCCGATATCCGGTATGGTATACTTTAGATCTTCTAGAGAAT
ACTCCTGTCAAATACGTTGAAATATATACCCTATAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_a10.b1 MSMg01no069_a10.b1 CHROMAT_FILE:
MSMg01no069_a10.b1 PHD_FILE: MSMg01no069_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:39 2005
         (199 letters)



>mm_chr11_24224580_24225178
          Length = 599

 Score =  321 bits (166), Expect = 2e-92
 Identities = 181/188 (96%), Gaps = 4/188 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtccagatgacatattggctgccatggtgttagggacatcagtagccccataaggagta 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 201 ggtccagatgacatattggctgccatggtgttagggacatcagtagcagcataaggagta 260

                                                                       
Query: 61  gttgtctaagtattataattgcataaacagtggtcagctttcccatgaaagtacctaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgtctaagtattataattgcataaacagtggtcagctttcccatgaaagtacctaatt 320

                                                                       
Query: 121 gagtagttaagtatactctattaggctgcaattatggatctctcctcatgtgtgtgtgtg 180
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   
Sbjct: 321 gagtagttaagtatacactattaggctgcaattatggatctctcctcatgtgtgtgt--- 377

                   
Query: 181 tctatgtg 188
            |||||||
Sbjct: 378 -ctatgtg 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)