BAC Information

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BAC

Clone NameMSMg01-069K01
Chromosome11 (Build37)
Map Location 62,656,307 - 62,656,561
singlet/doubletsinglet
Overlap geneTrim16
Upstream geneUlk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286
Downstream geneFbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799, LOC100041690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069K01.T7 (MSMg01no069_k01.b1)MSMg01-069K01.TJ (MSMg01no069_k01.g1)
ACCAG293840AG293841
length793697
length of high quality
(start - end)
42 (62 - 103)256 (70 - 325)
definitionCHROMAT_FILE: MSMg01no069_k01.b1 PHD_FILE: MSMg01no069_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:26 2005CHROMAT_FILE: MSMg01no069_k01.g1 PHD_FILE: MSMg01no069_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGCTATACGACTCCTATATTCAGAGGATCCGCGGAATTCCTGTTCTTG
CCTATTGAGATGGCTGACTCTTCAGTGAAAGACTTTAGGTTTAAACTTTA
GGTTTGTACCTCACGATGGATAGATAGATAGTTAATAGATAGATACATAG
ATAGATAGCTACATAGATAGATCGATCCCTCTCCCCCTCCTCTCCCTCCC
TCCTTCTTTCTTCTTCCTTTTTTTCTTCTTTTTCCTCTTTTCCCTCTCTT
TTCCTCCTTCTTTTCTTTTCTCCTCTTTCCCTCCCTCCCTTCTTCCCCCT
CCCCTCTTCCTCTCTTCCCCTCCTTCCTTCTTTTCTCCCCTCCCCTCCTC
CCTCTTTCCCTTCCTCCCTTTTTTTCTTTTTTTCCCCCCCCCCCCCCCCC
CCCCTTACTCTCTTCTCTTCCTCTCCTCATTCCTCTCCTCCCCTCCCCCT
TCCATCCTTATCATCTTTCCCTCTCTTTTCCTCTCCCTCTTTCTCTTCTT
CCTCTCCCCCCCCCTTCTTCCCTCCTTTCTTCTATCTTCCCTTCCCTCCT
CTCCCTTTTCTCCCTCCTTTTTCCTTCTTCCTCCTCCCTACCCTTTTCCT
CCTTCTTCTTCTTCCTTTCCTTCCTCTTTTTTCCTTTTTTTCCCCCTCTC
CCTCTTTTTTTCCTTCTTCTCTCCCCTTCCTTTCCCTTCCCTTTTTCCTT
TTTATCCCTCCTTTCCCCTTCCTTCCCTCTTTCTTCCCATTCTCTCGTTG
TTCCCCTCCCTTCCCCTCTCTATTCTCCTCCCCCTCTTCTTTN
TCATGCAGTGGTAGCCTGGCGCCGCCTGTCTCCGAATTTAGGTGACCTAT
AGAATTATCCCAAAATTCGTGTGGCTTTTCATGTCGTAATAACCAAGTAA
GAACATATACTTACTCCTATACCAAATACTATTTATTTATTGTAAGAACA
CTCCAAATCCTGTCTTCCAATTATTTTGAAATAAACCTGCTTTAAAAATA
TATTTTTTACTAGTATTTGCCATTTGCATTACTACAGACTATTCGAGAAA
CTGCTTTAGAATTCTGCTTTAGAGTAATGGCACATTTGTGAGTCTGTTAT
TTCCAGAAGGGTTTTTTTTTTGAGACCTGAGATCACAGGCGTGTGTGCCT
TGTTTATTGCACACACCCACGTGTGTCCCTTGATTGCTGAGATTACAGGC
GTGTACTCCCCGTCTAAAGAAATTACCCATGTGTGTATTCTGTCTGCTGA
CATTACCGGCGCCTTTGCCTTGCCTGTAGCCATTACCTATGTGTGTTCCC
TGTCTTCCCAATATCCCAACGTGCGAAATATACACTGTCCATTATATCCC
CTTTATCGATACTCTTCCTCTTAACTTCTCATAATTCATGCCATTCCTCT
TTTCTCCCCTTTCTTTTAATTCTGTCCTCTCGCGTTCCAGATCTTCATTT
ACCCCTTTCCTCTCTTTTCCGCCCTTTCCCTCCCTTTCCCGCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_k01.g1 MSMg01no069_k01.g1 CHROMAT_FILE:
MSMg01no069_k01.g1 PHD_FILE: MSMg01no069_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:26 2005
         (256 letters)



>mm_chr11_62656108_62656763
          Length = 656

 Score =  424 bits (219), Expect = e-123
 Identities = 248/259 (95%), Gaps = 7/259 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggcttttca-tgtcgtaataaccaagtaagaacatatacttactcc-tataccaaat 58
           |||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||| 
Sbjct: 200 tgtggcttttcagtgtcgtaataaccaagtaagaacatatactta-tccctataccaaag 258

                                                                       
Query: 59  actatttatttattgtaagaacactccaaatcctgtcttccaattattttgaaataaacc 118
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 259 actatttatttattgtaagaacactccaaatcctgtcttccaattgttttgaaataaacc 318

                                                                       
Query: 119 tgctttaaaaatatatttttta-ctagtatttgccatttgcattactacagactattcga 177
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgctttaaaaatatatttttttgctagtatttgccatttgcattactacagactattcga 378

                                                                       
Query: 178 gaaactgctttagaattctgctttagagtaatggcacatttgtgagtctgttatttccag 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaaactgctttagaattctgctttagagtaatggcacatttgtgagtctgttatttccag 438

                              
Query: 238 aagggttttttttttgaga 256
           |||    ||||||||||||
Sbjct: 439 aaga---ttttttttgaga 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)